STRINGSTRING
RCBTB1 RCBTB1 RPA1 RPA1 MEIOB MEIOB VWA5B1 VWA5B1 Lig1 Lig1 RFC1 RFC1 POLE2 POLE2 VWA5A VWA5A Pold3 Pold3 APEX2 APEX2 RFC3 RFC3 RPA2 RPA2 PCNA PCNA POLB POLB ADPRHL2 ADPRHL2 APEX1 APEX1 FEN1 FEN1 RCBTB2 RCBTB2 RFC4 RFC4 ATAD5 ATAD5 RFC2 RFC2 POLE POLE PARP3 PARP3 PARG PARG H0VSI3_CAVPO H0VSI3_CAVPO Parp1 Parp1 RFC5 RFC5 PARP2 PARP2 POLD2 POLD2 VWA5B2 VWA5B2 POLD1 POLD1 POLE4 POLE4 Pold4 Pold4 POLE3 POLE3 ENSCPOP00000024428 ENSCPOP00000024428 RPA3 RPA3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
MEIOBMeiosis specific with OB-fold. (471 aa)
VWA5B1Von Willebrand factor A domain containing 5B1. (1203 aa)
Lig1DNA ligase. (909 aa)
RFC1Replication factor C subunit 1. (1153 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
VWA5AVon Willebrand factor A domain containing 5A. (798 aa)
Pold3Uncharacterized protein. (466 aa)
APEX2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (514 aa)
RFC3Replication factor C subunit 3. (220 aa)
RPA2Replication protein A2. (270 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (340 aa)
ADPRHL2ADP-ribosylhydrolase like 2. (367 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
RFC4Replication factor C subunit 4. (363 aa)
ATAD5ATPase family AAA domain containing 5. (1831 aa)
RFC2Replication factor C subunit 2. (352 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2283 aa)
PARP3Poly [ADP-ribose] polymerase. (533 aa)
PARGPoly(ADP-ribose) glycohydrolase. (973 aa)
H0VSI3_CAVPODNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (677 aa)
Parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
RFC5Replication factor C subunit 5. (340 aa)
PARP2Poly [ADP-ribose] polymerase. (536 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
VWA5B2Von Willebrand factor A domain containing 5B2. (1204 aa)
POLD1DNA polymerase. (1134 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (116 aa)
Pold4Uncharacterized protein. (107 aa)
POLE3DNA polymerase epsilon 3, accessory subunit. (147 aa)
ENSCPOP00000024428PARP-type domain-containing protein. (104 aa)
RPA3Replication protein A3. (121 aa)
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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