58 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rimbp3c	Uncharacterized protein. (1586 aa)
	MAOA	Amine oxidase. (461 aa)
	LIN7A	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (205 aa)
	SLC22A2	Solute carrier family 22 member 2. (514 aa)
	RIMS3	Regulating synaptic membrane exocytosis 3. (308 aa)
	SYT1	Synaptotagmin 1. (422 aa)
	SLC1A6	Amino acid transporter. (560 aa)
	GLS2	Glutaminase 2. (558 aa)
	LIN7B	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (207 aa)
	SNAP25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (205 aa)
	STX1A	Syntaxin 1A; Belongs to the syntaxin family. (288 aa)
	DNAJC5B	DnaJ heat shock protein family (Hsp40) member C5 beta. (198 aa)
	PPFIA2	PTPRF interacting protein alpha 2. (1165 aa)
	SLC18A2	Solute carrier family 18 member A2. (516 aa)
	GAD1	Glutamate decarboxylase 1. (594 aa)
	CHAT	Choline O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (621 aa)
	SLC17A7	Solute carrier family 17 member 7. (560 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1410 aa)
	SYN3	Synapsin III. (560 aa)
	SLC1A3	Amino acid transporter. (542 aa)
	SLC1A2	Amino acid transporter. (573 aa)
	UNC13C	Unc-13 homolog C. (2198 aa)
	SLC6A11	Solute carrier family 6 member 11. (640 aa)
	SYN2	Synapsin II. (472 aa)
	NAAA	N-acylethanolamine-hydrolyzing acid amidase subunit alpha; Degrades bioactive fatty acid amides to their corresponding acids, with the following preference: N-palmitoylethanolamine > N- myristoylethanolamine > N-stearoylethanolamine > N-oleoylethanolamine > N-linoleoylethanolamine > N-arachidonoylethanolamine. (347 aa)
	SLC32A1	Solute carrier family 32 member 1. (526 aa)
	SLC1A7	Amino acid transporter. (574 aa)
	CASK	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family. (926 aa)
	GLS	Glutaminase. (649 aa)
	SLC1A1	Amino acid transporter. (525 aa)
	SYN1	Synapsin I. (690 aa)
	GAD2	Glutamate decarboxylase 2. (585 aa)
	SLC6A13	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (601 aa)
	UNC13A	Unc-13 homolog A. (1650 aa)
	PPFIA1	PTPRF interacting protein alpha 1. (1267 aa)
	SLC18A3	Solute carrier family 18 member A3. (533 aa)
	SLC6A1	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (589 aa)
	SLC5A7	Solute carrier family 5 member 7; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (579 aa)
	RIMBP2	RIMS binding protein 2. (830 aa)
	ARL6IP5	PRA1 family protein. (188 aa)
	UNC13B	Unc-13 homolog B. (1959 aa)
	SLC6A12	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (611 aa)
	DNAJC5	DnaJ heat shock protein family (Hsp40) member C5. (198 aa)
	SLC38A2	Solute carrier family 38 member 2. (509 aa)
	TSPOAP1	TSPO associated protein 1. (1837 aa)
	APBA1	Amyloid beta precursor protein binding family A member 1. (837 aa)
	PRAF2	PRA1 family protein. (178 aa)
	ABAT	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (500 aa)
	CPLX1	Complexin 1. (134 aa)
	ALDH5A1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (472 aa)
	STXBP1	Syntaxin binding protein 1; Belongs to the STXBP/unc-18/SEC1 family. (603 aa)
	Rims1	C2 domain-containing protein. (219 aa)
	CPLX2	Complexin 2. (134 aa)
	RAB3A	RAB3A, member RAS oncogene family. (220 aa)
	LIN7C	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (197 aa)
	Vamp2	V-SNARE coiled-coil homology domain-containing protein. (164 aa)
	PPFIA3	PTPRF interacting protein alpha 3. (1194 aa)
	PPFIA4	PTPRF interacting protein alpha 4. (1200 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	ALDH5A1	ENSCPOP00000025444	ENSCPOP00000026312	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.978
ABAT	GAD1	ENSCPOP00000025444	ENSCPOP00000003750	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 1.	0.948
ABAT	GAD2	ENSCPOP00000025444	ENSCPOP00000012362	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 2.	0.875
ABAT	SLC1A1	ENSCPOP00000025444	ENSCPOP00000011633	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.461
ABAT	SLC1A2	ENSCPOP00000025444	ENSCPOP00000007025	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.452
ABAT	SLC1A3	ENSCPOP00000025444	ENSCPOP00000006730	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.455
ABAT	SLC1A6	ENSCPOP00000025444	ENSCPOP00000001896	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.455
ABAT	SLC1A7	ENSCPOP00000025444	ENSCPOP00000009609	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.452
ALDH5A1	ABAT	ENSCPOP00000026312	ENSCPOP00000025444	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.978
ALDH5A1	GAD1	ENSCPOP00000026312	ENSCPOP00000003750	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase 1.	0.813
ALDH5A1	GAD2	ENSCPOP00000026312	ENSCPOP00000012362	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase 2.	0.740
ALDH5A1	GLS	ENSCPOP00000026312	ENSCPOP00000011395	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Glutaminase.	0.565
ALDH5A1	GLS2	ENSCPOP00000026312	ENSCPOP00000002137	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Glutaminase 2.	0.565
ALDH5A1	MAOA	ENSCPOP00000026312	ENSCPOP00000000927	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.595
APBA1	CASK	ENSCPOP00000025098	ENSCPOP00000009747	Amyloid beta precursor protein binding family A member 1.	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	0.999
APBA1	CPLX1	ENSCPOP00000025098	ENSCPOP00000026157	Amyloid beta precursor protein binding family A member 1.	Complexin 1.	0.437
APBA1	LIN7A	ENSCPOP00000025098	ENSCPOP00000001243	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.881
APBA1	LIN7B	ENSCPOP00000025098	ENSCPOP00000002242	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.834
APBA1	LIN7C	ENSCPOP00000025098	ENSCPOP00000030260	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.834
APBA1	PPFIA1	ENSCPOP00000025098	ENSCPOP00000015200	Amyloid beta precursor protein binding family A member 1.	PTPRF interacting protein alpha 1.	0.589