13 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GNAT1	Alpha-transducin. (350 aa)
	GNB1	Beta-transducin. (340 aa)
	RHO	Rhodopsin. (348 aa)
	CNGB3	Cyclic nucleotide gated channel subunit beta 3. (667 aa)
	H0VQQ2_CAVPO	Cyclic nucleotide-binding domain-containing protein. (852 aa)
	CNGA1	Cyclic nucleotide gated channel subunit alpha 1. (507 aa)
	PDE6B	Phosphodiesterase. (854 aa)
	PDE6H	Phosphodiesterase 6H. (83 aa)
	ENSCPOP00000026472	Uncharacterized protein. (286 aa)
	PDE6G	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma; Participates in processes of transmission and amplification of the visual signal. cGMP-PDEs are the effector molecules in G- protein-mediated phototransduction in vertebrate rods and cones (By similarity). (87 aa)
	PDE6C	Phosphodiesterase. (862 aa)
	PDE6A	Phosphodiesterase. (860 aa)
	GNGT1	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (74 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNGA1	CNGB3	ENSCPOP00000016838	ENSCPOP00000011652	Cyclic nucleotide gated channel subunit alpha 1.	Cyclic nucleotide gated channel subunit beta 3.	0.960
CNGA1	ENSCPOP00000026472	ENSCPOP00000016838	ENSCPOP00000026472	Cyclic nucleotide gated channel subunit alpha 1.	Uncharacterized protein.	0.975
CNGA1	GNAT1	ENSCPOP00000016838	ENSCPOP00000007345	Cyclic nucleotide gated channel subunit alpha 1.	Alpha-transducin.	0.714
CNGA1	GNGT1	ENSCPOP00000016838	ENSCPOP00000007578	Cyclic nucleotide gated channel subunit alpha 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.649
CNGA1	H0VQQ2_CAVPO	ENSCPOP00000016838	ENSCPOP00000012882	Cyclic nucleotide gated channel subunit alpha 1.	Cyclic nucleotide-binding domain-containing protein.	0.984
CNGA1	PDE6A	ENSCPOP00000016838	ENSCPOP00000001770	Cyclic nucleotide gated channel subunit alpha 1.	Phosphodiesterase.	0.777
CNGA1	PDE6B	ENSCPOP00000016838	ENSCPOP00000017263	Cyclic nucleotide gated channel subunit alpha 1.	Phosphodiesterase.	0.680
CNGA1	PDE6C	ENSCPOP00000016838	ENSCPOP00000003867	Cyclic nucleotide gated channel subunit alpha 1.	Phosphodiesterase.	0.685
CNGA1	PDE6G	ENSCPOP00000016838	ENSCPOP00000018118	Cyclic nucleotide gated channel subunit alpha 1.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma; Participates in processes of transmission and amplification of the visual signal. cGMP-PDEs are the effector molecules in G- protein-mediated phototransduction in vertebrate rods and cones (By similarity).	0.472
CNGA1	PDE6H	ENSCPOP00000016838	ENSCPOP00000024181	Cyclic nucleotide gated channel subunit alpha 1.	Phosphodiesterase 6H.	0.720
CNGA1	RHO	ENSCPOP00000016838	ENSCPOP00000004486	Cyclic nucleotide gated channel subunit alpha 1.	Rhodopsin.	0.654
CNGB3	CNGA1	ENSCPOP00000011652	ENSCPOP00000016838	Cyclic nucleotide gated channel subunit beta 3.	Cyclic nucleotide gated channel subunit alpha 1.	0.960
CNGB3	ENSCPOP00000026472	ENSCPOP00000011652	ENSCPOP00000026472	Cyclic nucleotide gated channel subunit beta 3.	Uncharacterized protein.	0.841
CNGB3	GNAT1	ENSCPOP00000011652	ENSCPOP00000007345	Cyclic nucleotide gated channel subunit beta 3.	Alpha-transducin.	0.630
CNGB3	GNGT1	ENSCPOP00000011652	ENSCPOP00000007578	Cyclic nucleotide gated channel subunit beta 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.673
CNGB3	PDE6A	ENSCPOP00000011652	ENSCPOP00000001770	Cyclic nucleotide gated channel subunit beta 3.	Phosphodiesterase.	0.773
CNGB3	PDE6B	ENSCPOP00000011652	ENSCPOP00000017263	Cyclic nucleotide gated channel subunit beta 3.	Phosphodiesterase.	0.506
CNGB3	PDE6C	ENSCPOP00000011652	ENSCPOP00000003867	Cyclic nucleotide gated channel subunit beta 3.	Phosphodiesterase.	0.851
CNGB3	PDE6H	ENSCPOP00000011652	ENSCPOP00000024181	Cyclic nucleotide gated channel subunit beta 3.	Phosphodiesterase 6H.	0.671
CNGB3	RHO	ENSCPOP00000011652	ENSCPOP00000004486	Cyclic nucleotide gated channel subunit beta 3.	Rhodopsin.	0.635