STRINGSTRING
TDRD3 TDRD3 RPA1 RPA1 EXO1 EXO1 ATRIP ATRIP RAD17 RAD17 ABRAXAS1 ABRAXAS1 MEIOB MEIOB BLM BLM H0UX17_CAVPO H0UX17_CAVPO Rad50 Rad50 PIAS4 PIAS4 WRN WRN WEE1 WEE1 SLF1 SLF1 Cdk1 Cdk1 CHEK2 CHEK2 Babam1 Babam1 ATR ATR NSD2 NSD2 RBBP8 RBBP8 H0VBD1_CAVPO H0VBD1_CAVPO RFC3 RFC3 RPA2 RPA2 EXD2 EXD2 RMI1 RMI1 UIMC1 UIMC1 HERC2 HERC2 ATM ATM RFC4 RFC4 YWHAQ YWHAQ BARD1 BARD1 BRIP1 BRIP1 RFC2 RFC2 H2BC1 H2BC1 LOC106026468 LOC106026468 Brca1 Brca1 NBN NBN MRE11 MRE11 RECQL4 RECQL4 RNF169 RNF169 Wee2 Wee2 Chek1 Chek1 H0VYV4_CAVPO H0VYV4_CAVPO RAD9B RAD9B LOC100728920 LOC100728920 RFC5 RFC5 LOC111756490 LOC111756490 LOC100735042 LOC100735042 H0W9P9_CAVPO H0W9P9_CAVPO HUS1 HUS1 H0WDH3_CAVPO H0WDH3_CAVPO LOC100735546 LOC100735546 YWHAH YWHAH KAT5 KAT5 DNA2 DNA2 ENSCPOP00000023362 ENSCPOP00000023362 RAD1 RAD1 LOC100717510 LOC100717510 ENSCPOP00000023894 ENSCPOP00000023894 BRCC3 BRCC3 RAD9A RAD9A LOC100733876 LOC100733876 ENSCPOP00000024311 ENSCPOP00000024311 ENSCPOP00000024347 ENSCPOP00000024347 HIST2H2BE HIST2H2BE ENSCPOP00000024383 ENSCPOP00000024383 YWHAB YWHAB ANKRD12 ANKRD12 H2BC18 H2BC18 LOC100728325 LOC100728325 RNF168 RNF168 RHNO1 RHNO1 YWHAZ YWHAZ ENSCPOP00000025455 ENSCPOP00000025455 LOC100713990 LOC100713990 ENSCPOP00000026400 ENSCPOP00000026400 ENSCPOP00000026646 ENSCPOP00000026646 ENSCPOP00000027005 ENSCPOP00000027005 YWHAG YWHAG RPA3 RPA3 BABAM2 BABAM2 TOPBP1 TOPBP1 UBE2V2 UBE2V2 ENSCPOP00000028113 ENSCPOP00000028113 ENSCPOP00000028155 ENSCPOP00000028155 ENSCPOP00000029061 ENSCPOP00000029061 ENSCPOP00000029129 ENSCPOP00000029129 ENSCPOP00000029297 ENSCPOP00000029297 Ywhae Ywhae TP53 TP53 RMI2 RMI2 ENSCPOP00000030090 ENSCPOP00000030090 ENSCPOP00000030888 ENSCPOP00000030888 LOC106027456 LOC106027456 RNF8 RNF8 SFN SFN TOP3A TOP3A LOC100731150 LOC100731150 ENSCPOP00000033122 ENSCPOP00000033122
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TDRD3Tudor domain containing 3. (692 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
EXO1Exonuclease 1. (839 aa)
ATRIPATR interacting protein. (792 aa)
RAD17RAD17 checkpoint clamp loader component. (696 aa)
ABRAXAS1Abraxas 1, BRCA1 A complex subunit. (371 aa)
MEIOBMeiosis specific with OB-fold. (471 aa)
BLMBLM RecQ like helicase. (1405 aa)
H0UX17_CAVPOBRCT domain-containing protein. (722 aa)
Rad50Zinc-hook domain-containing protein. (1275 aa)
PIAS4Protein inhibitor of activated STAT 4. (514 aa)
WRNWRN RecQ like helicase. (1462 aa)
WEE1Wee1-like protein kinase. (612 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1061 aa)
Cdk1Protein kinase domain-containing protein. (240 aa)
CHEK2Checkpoint kinase 2. (546 aa)
Babam1Uncharacterized protein. (337 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2539 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1366 aa)
RBBP8RB binding protein 8, endonuclease. (900 aa)
H0VBD1_CAVPO14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (105 aa)
RFC3Replication factor C subunit 3. (220 aa)
RPA2Replication protein A2. (270 aa)
EXD2Exonuclease 3'-5' domain containing 2. (619 aa)
RMI1RecQ mediated genome instability 1. (617 aa)
UIMC1Ubiquitin interaction motif containing 1. (716 aa)
HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4711 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3031 aa)
RFC4Replication factor C subunit 4. (363 aa)
YWHAQTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta; Belongs to the 14-3-3 family. (245 aa)
BARD1BRCA1 associated RING domain 1. (662 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (971 aa)
RFC2Replication factor C subunit 2. (352 aa)
H2BC1Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC106026468UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (174 aa)
Brca1Uncharacterized protein. (79 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (751 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (706 aa)
RECQL4RecQ like helicase 4. (1226 aa)
RNF169Ring finger protein 169. (699 aa)
Wee2Wee1-like protein kinase. (557 aa)
Chek1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (439 aa)
H0VYV4_CAVPOUncharacterized protein. (260 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (401 aa)
LOC100728920Histone domain-containing protein; Belongs to the histone H2B family. (128 aa)
RFC5Replication factor C subunit 5. (340 aa)
LOC111756490Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC100735042Histone domain-containing protein; Belongs to the histone H2B family. (125 aa)
H0W9P9_CAVPOWee1-like protein kinase. (551 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (282 aa)
H0WDH3_CAVPO14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (246 aa)
LOC100735546Histone H2B; Belongs to the histone H2B family. (126 aa)
YWHAH14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (246 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (541 aa)
DNA2DNA replication helicase/nuclease 2. (1021 aa)
ENSCPOP00000023362UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
RAD1RAD1 checkpoint DNA exonuclease. (282 aa)
LOC100717510Histone H2B; Belongs to the histone H2B family. (126 aa)
ENSCPOP00000023894annotation not available (126 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (291 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (384 aa)
LOC100733876annotation not available (103 aa)
ENSCPOP00000024311annotation not available (126 aa)
ENSCPOP00000024347annotation not available (103 aa)
HIST2H2BEHistone H2B; Belongs to the histone H2B family. (126 aa)
ENSCPOP00000024383annotation not available (126 aa)
YWHABTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta; Belongs to the 14-3-3 family. (246 aa)
ANKRD12Ankyrin repeat domain 12. (2046 aa)
H2BC18Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC100728325annotation not available (103 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] (573 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (233 aa)
YWHAZTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta; Belongs to the 14-3-3 family. (245 aa)
ENSCPOP00000025455Protein kinase domain-containing protein. (360 aa)
LOC100713990Histone H2B; Belongs to the histone H2B family. (126 aa)
ENSCPOP00000026400annotation not available (125 aa)
ENSCPOP00000026646annotation not available (126 aa)
ENSCPOP00000027005UBIQUITIN_CONJUGAT_2 domain-containing protein. (83 aa)
YWHAGTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma; Belongs to the 14-3-3 family. (247 aa)
RPA3Replication protein A3. (121 aa)
BABAM2BRISC and BRCA1 A complex member 2. (358 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1392 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (145 aa)
ENSCPOP0000002811314_3_3 domain-containing protein; Belongs to the 14-3-3 family. (231 aa)
ENSCPOP00000028155UBIQUITIN_CONJUGAT_2 domain-containing protein. (102 aa)
ENSCPOP00000029061annotation not available (126 aa)
ENSCPOP00000029129Protein kinase domain-containing protein. (254 aa)
ENSCPOP00000029297annotation not available (103 aa)
Ywhae14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (255 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] (423 aa)
RMI2RecQ mediated genome instability 2. (147 aa)
ENSCPOP00000030090annotation not available (126 aa)
ENSCPOP00000030888Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (238 aa)
LOC106027456annotation not available (126 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (486 aa)
SFNStratifin; Belongs to the 14-3-3 family. (248 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1027 aa)
LOC100731150annotation not available (103 aa)
ENSCPOP00000033122MPN domain-containing protein. (250 aa)
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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