50 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Trim58	Uncharacterized protein. (472 aa)
	TRIML2	Tripartite motif family like 2. (431 aa)
	TRIM3	Tripartite motif containing 3. (744 aa)
	PML	Promyelocytic leukemia. (849 aa)
	H0V0S2_CAVPO	B box-type domain-containing protein. (274 aa)
	TRIM54	Tripartite motif containing 54. (364 aa)
	TRIM17	Tripartite motif containing 17. (477 aa)
	TRIM71	Tripartite motif containing 71. (866 aa)
	H0V4A5_CAVPO	Uncharacterized protein. (830 aa)
	Trim28	Uncharacterized protein. (829 aa)
	TRIM29	Tripartite motif containing 29. (586 aa)
	TRIM37	Tripartite motif containing 37. (926 aa)
	TRIM2	Tripartite motif containing 2. (744 aa)
	TRIM66	Tripartite motif containing 66. (1319 aa)
	Mefv	Uncharacterized protein. (618 aa)
	TRIM33	Tripartite motif containing 33. (1128 aa)
	TRIM36	Tripartite motif containing 36. (706 aa)
	TRIM9	Tripartite motif containing 9. (786 aa)
	TRIM44	Tripartite motif containing 44. (299 aa)
	TRIM24	Tripartite motif containing 24. (1002 aa)
	TRIM42	Tripartite motif containing 42. (724 aa)
	TRIM21	Tripartite motif containing 21. (467 aa)
	TRIM67	Tripartite motif containing 67. (753 aa)
	MID2	Midline 2. (685 aa)
	TRIM41	Uncharacterized protein. (630 aa)
	LOC100727489	Uncharacterized protein. (534 aa)
	TRIM13	Tripartite motif containing 13. (407 aa)
	TRIM72	Tripartite motif containing 72. (477 aa)
	TRIM63	Tripartite motif containing 63. (329 aa)
	LOC100720319	Uncharacterized protein. (644 aa)
	ENSCPOP00000021421	Uncharacterized protein. (168 aa)
	MID1	Midline 1. (667 aa)
	TRIM35	Tripartite motif containing 35. (494 aa)
	LOC100714924	Uncharacterized protein. (288 aa)
	TRIM56	Tripartite motif containing 56. (732 aa)
	Trim16	Uncharacterized protein. (553 aa)
	TRIM11	Tripartite motif containing 11. (468 aa)
	LOC100714297	Uncharacterized protein. (464 aa)
	TRIM6	Tripartite motif containing 6. (488 aa)
	LOC100715128	Uncharacterized protein. (474 aa)
	TRIM23	Tripartite motif containing 23. (574 aa)
	TRIM46	Tripartite motif containing 46. (672 aa)
	TRIM26	Tripartite motif containing 26. (545 aa)
	TRIM32	Tripartite motif containing 32. (653 aa)
	TRIM39	Tripartite motif containing 39. (488 aa)
	LOC100715212	Uncharacterized protein. (482 aa)
	TRIM27	Tripartite motif containing 27. (504 aa)
	TRIM55	Tripartite motif containing 55. (542 aa)
	LOC100715495	Uncharacterized protein. (284 aa)
	TRIM50	Tripartite motif containing 50. (490 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0V0S2_CAVPO	TRIM9	ENSCPOP00000003067	ENSCPOP00000009390	B box-type domain-containing protein.	Tripartite motif containing 9.	0.435
H0V4A5_CAVPO	TRIM17	ENSCPOP00000004442	ENSCPOP00000003799	Uncharacterized protein.	Tripartite motif containing 17.	0.453
H0V4A5_CAVPO	TRIM24	ENSCPOP00000004442	ENSCPOP00000010171	Uncharacterized protein.	Tripartite motif containing 24.	0.751
H0V4A5_CAVPO	TRIM33	ENSCPOP00000004442	ENSCPOP00000009104	Uncharacterized protein.	Tripartite motif containing 33.	0.658
PML	TRIM27	ENSCPOP00000001181	ENSCPOP00000011051	Promyelocytic leukemia.	Tripartite motif containing 27.	0.451
TRIM11	TRIM44	ENSCPOP00000024331	ENSCPOP00000010127	Tripartite motif containing 11.	Tripartite motif containing 44.	0.647
TRIM11	TRIM66	ENSCPOP00000024331	ENSCPOP00000006851	Tripartite motif containing 11.	Tripartite motif containing 66.	0.570
TRIM17	H0V4A5_CAVPO	ENSCPOP00000003799	ENSCPOP00000004442	Tripartite motif containing 17.	Uncharacterized protein.	0.453
TRIM17	TRIM24	ENSCPOP00000003799	ENSCPOP00000010171	Tripartite motif containing 17.	Tripartite motif containing 24.	0.497
TRIM17	TRIM33	ENSCPOP00000003799	ENSCPOP00000009104	Tripartite motif containing 17.	Tripartite motif containing 33.	0.439
TRIM17	TRIM39	ENSCPOP00000003799	ENSCPOP00000030914	Tripartite motif containing 17.	Tripartite motif containing 39.	0.538
TRIM17	TRIM44	ENSCPOP00000003799	ENSCPOP00000010127	Tripartite motif containing 17.	Tripartite motif containing 44.	0.484
TRIM17	Trim28	ENSCPOP00000003799	ENSCPOP00000005181	Tripartite motif containing 17.	Uncharacterized protein.	0.453
TRIM2	TRIM3	ENSCPOP00000005509	ENSCPOP00000000930	Tripartite motif containing 2.	Tripartite motif containing 3.	0.553
TRIM2	TRIM44	ENSCPOP00000005509	ENSCPOP00000010127	Tripartite motif containing 2.	Tripartite motif containing 44.	0.629
TRIM23	TRIM24	ENSCPOP00000027498	ENSCPOP00000010171	Tripartite motif containing 23.	Tripartite motif containing 24.	0.516
TRIM23	TRIM27	ENSCPOP00000027498	ENSCPOP00000011051	Tripartite motif containing 23.	Tripartite motif containing 27.	0.423
TRIM23	TRIM29	ENSCPOP00000027498	ENSCPOP00000005397	Tripartite motif containing 23.	Tripartite motif containing 29.	0.535
TRIM23	TRIM37	ENSCPOP00000027498	ENSCPOP00000005451	Tripartite motif containing 23.	Tripartite motif containing 37.	0.451
TRIM23	TRIM41	ENSCPOP00000027498	ENSCPOP00000014721	Tripartite motif containing 23.	Uncharacterized protein.	0.545