(13 nodes) Macrophage chemotaxis network (Heterocephalus glaber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GW7_12396	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	GW7_08365	Myosin-IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (762 aa)
	GW7_08159	C-C motif chemokine. (71 aa)
	Fam19a4	Protein FAM19A4. (96 aa)
	GW7_04475	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (641 aa)
	NINJ1	Ninjurin-1. (153 aa)
	Lgals3	Galectin. (197 aa)
	GW7_11244	Endothelin B receptor; Belongs to the G-protein coupled receptor 1 family. (370 aa)
	GW7_17889	Chemokine-like factor. (87 aa)
	GW7_15289	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (152 aa)
	Rpl13a	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (199 aa)
	GW7_15438	VEGF co-regulated chemokine 1. (58 aa)
	EDN2	Endothelin-2 preproprotein. (178 aa)

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDN2	GW7_11244	G5AQJ4	G5BEQ1	Endothelin-2 preproprotein.	Endothelin B receptor; Belongs to the G-protein coupled receptor 1 family.	0.753
GW7_08159	GW7_15438	G5BVM7	G5AZS0	C-C motif chemokine.	VEGF co-regulated chemokine 1.	0.522
GW7_11244	EDN2	G5BEQ1	G5AQJ4	Endothelin B receptor; Belongs to the G-protein coupled receptor 1 family.	Endothelin-2 preproprotein.	0.753
GW7_12396	Rpl13a	G5AVJ5	G5B8P1	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.900
GW7_15438	GW7_08159	G5AZS0	G5BVM7	VEGF co-regulated chemokine 1.	C-C motif chemokine.	0.522
Rpl13a	GW7_12396	G5B8P1	G5AVJ5	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.900