33 items (Heterocephalus glaber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Sema3f	Semaphorin-3F; Belongs to the semaphorin family. (845 aa)
	GW7_06752	Semaphorin-6B; Belongs to the semaphorin family. (888 aa)
	SEMA4D	Semaphorin-4D isoform 2; Belongs to the semaphorin family. (862 aa)
	Plxnd1	Plexin-D1. (1751 aa)
	Sema3c	Semaphorin-3C; Belongs to the semaphorin family. (751 aa)
	GW7_01606	Semaphorin-3G; Belongs to the semaphorin family. (1157 aa)
	Sema7a	Semaphorin-7A; Belongs to the semaphorin family. (694 aa)
	Sema6d	Semaphorin-6D; Belongs to the semaphorin family. (1079 aa)
	GW7_02022	Plexin-B3. (1738 aa)
	Plxna2	Plexin-A2. (1876 aa)
	Sema4c	Semaphorin-4C; Belongs to the semaphorin family. (835 aa)
	Sema6a	Semaphorin-6A; Belongs to the semaphorin family. (1046 aa)
	GW7_19330	Plexin-A3. (1943 aa)
	Plxna1	Plexin-A1. (1908 aa)
	GW7_00587	Plexin-B2. (1922 aa)
	SEMA5A	Semaphorin-5A. (1073 aa)
	Sema3e	Semaphorin-3E; Belongs to the semaphorin family. (717 aa)
	Sema4f	Semaphorin-4F; Belongs to the semaphorin family. (772 aa)
	GW7_14289	Semaphorin-4A; Belongs to the semaphorin family. (724 aa)
	GW7_10550	Semaphorin-6C; Belongs to the semaphorin family. (250 aa)
	Sema6c	Semaphorin-6C; Belongs to the semaphorin family. (991 aa)
	GW7_15128	Semaphorin-3D; Belongs to the semaphorin family. (783 aa)
	Plxnb1	Plexin-B1. (2129 aa)
	GW7_19699	Semaphorin-5B. (1002 aa)
	Met	Hepatocyte growth factor receptor. (1398 aa)
	Sema4g	Semaphorin-4G; Belongs to the semaphorin family. (808 aa)
	Sema4b	Semaphorin-4B; Belongs to the semaphorin family. (818 aa)
	Plxna4	Plexin-A4. (1498 aa)
	GW7_11488	Semaphorin-3A; Belongs to the semaphorin family. (821 aa)
	GW7_00752	Plexin-C1. (140 aa)
	Plxnc1	Plexin-C1. (1303 aa)
	Sema3b	Semaphorin-3B; Belongs to the semaphorin family. (751 aa)
	GW7_19934	Macrophage-stimulating protein receptor. (1389 aa)

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GW7_00587	GW7_01606	G5B2H8	G5BUM1	Plexin-B2.	Semaphorin-3G; Belongs to the semaphorin family.	0.511
GW7_00587	GW7_06752	G5B2H8	G5BZ96	Plexin-B2.	Semaphorin-6B; Belongs to the semaphorin family.	0.454
GW7_00587	GW7_10550	G5B2H8	G5AJZ1	Plexin-B2.	Semaphorin-6C; Belongs to the semaphorin family.	0.454
GW7_00587	GW7_11488	G5B2H8	G5C4D6	Plexin-B2.	Semaphorin-3A; Belongs to the semaphorin family.	0.510
GW7_00587	GW7_14289	G5B2H8	G5ARA0	Plexin-B2.	Semaphorin-4A; Belongs to the semaphorin family.	0.685
GW7_00587	GW7_19699	G5B2H8	G5AV95	Plexin-B2.	Semaphorin-5B.	0.661
GW7_00587	GW7_19934	G5B2H8	G5BZX9	Plexin-B2.	Macrophage-stimulating protein receptor.	0.546
GW7_00587	Met	G5B2H8	G5ARC8	Plexin-B2.	Hepatocyte growth factor receptor.	0.690
GW7_00587	SEMA4D	G5B2H8	G5BZ44	Plexin-B2.	Semaphorin-4D isoform 2; Belongs to the semaphorin family.	0.918
GW7_00587	SEMA5A	G5B2H8	G5B1L5	Plexin-B2.	Semaphorin-5A.	0.676
GW7_00587	Sema3b	G5B2H8	G5BZY7	Plexin-B2.	Semaphorin-3B; Belongs to the semaphorin family.	0.487
GW7_00587	Sema3c	G5B2H8	G5BVU4	Plexin-B2.	Semaphorin-3C; Belongs to the semaphorin family.	0.456
GW7_00587	Sema3e	G5B2H8	G5B0R8	Plexin-B2.	Semaphorin-3E; Belongs to the semaphorin family.	0.538
GW7_00587	Sema4b	G5B2H8	G5CAA6	Plexin-B2.	Semaphorin-4B; Belongs to the semaphorin family.	0.643
GW7_00587	Sema4c	G5B2H8	G5BMU6	Plexin-B2.	Semaphorin-4C; Belongs to the semaphorin family.	0.765
GW7_00587	Sema4f	G5B2H8	G5AXE2	Plexin-B2.	Semaphorin-4F; Belongs to the semaphorin family.	0.545
GW7_00587	Sema4g	G5B2H8	G5CAE7	Plexin-B2.	Semaphorin-4G; Belongs to the semaphorin family.	0.657
GW7_00587	Sema6a	G5B2H8	G5BJS7	Plexin-B2.	Semaphorin-6A; Belongs to the semaphorin family.	0.454
GW7_00587	Sema6c	G5B2H8	G5AJZ0	Plexin-B2.	Semaphorin-6C; Belongs to the semaphorin family.	0.454
GW7_00587	Sema6d	G5B2H8	G5BR23	Plexin-B2.	Semaphorin-6D; Belongs to the semaphorin family.	0.454