(6 nodes) Box H/ACA RNP complex, and Box H/ACA snoRNP assembly network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RLQ9_TRIAD	PUA domain-containing protein. (487 aa)
	B3RUZ8_TRIAD	CS domain-containing protein. (320 aa)
	B3RVQ8_TRIAD	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (237 aa)
	B3RW33_TRIAD	Uncharacterized protein. (64 aa)
	B3S3H1_TRIAD	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (131 aa)
	B3S7P8_TRIAD	WD_REPEATS_REGION domain-containing protein. (422 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RLQ9_TRIAD	B3RUZ8_TRIAD	B3RLQ9	B3RUZ8	PUA domain-containing protein.	CS domain-containing protein.	0.999
B3RLQ9_TRIAD	B3RVQ8_TRIAD	B3RLQ9	B3RVQ8	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
B3RLQ9_TRIAD	B3RW33_TRIAD	B3RLQ9	B3RW33	PUA domain-containing protein.	Uncharacterized protein.	0.999
B3RLQ9_TRIAD	B3S3H1_TRIAD	B3RLQ9	B3S3H1	PUA domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
B3RLQ9_TRIAD	B3S7P8_TRIAD	B3RLQ9	B3S7P8	PUA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.986
B3RUZ8_TRIAD	B3RLQ9_TRIAD	B3RUZ8	B3RLQ9	CS domain-containing protein.	PUA domain-containing protein.	0.999
B3RUZ8_TRIAD	B3RVQ8_TRIAD	B3RUZ8	B3RVQ8	CS domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.939
B3RUZ8_TRIAD	B3RW33_TRIAD	B3RUZ8	B3RW33	CS domain-containing protein.	Uncharacterized protein.	0.948
B3RUZ8_TRIAD	B3S3H1_TRIAD	B3RUZ8	B3S3H1	CS domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.809
B3RUZ8_TRIAD	B3S7P8_TRIAD	B3RUZ8	B3S7P8	CS domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.456
B3RVQ8_TRIAD	B3RLQ9_TRIAD	B3RVQ8	B3RLQ9	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	PUA domain-containing protein.	0.999
B3RVQ8_TRIAD	B3RUZ8_TRIAD	B3RVQ8	B3RUZ8	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	CS domain-containing protein.	0.939
B3RVQ8_TRIAD	B3RW33_TRIAD	B3RVQ8	B3RW33	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Uncharacterized protein.	0.999
B3RVQ8_TRIAD	B3S3H1_TRIAD	B3RVQ8	B3S3H1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
B3RVQ8_TRIAD	B3S7P8_TRIAD	B3RVQ8	B3S7P8	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	WD_REPEATS_REGION domain-containing protein.	0.967
B3RW33_TRIAD	B3RLQ9_TRIAD	B3RW33	B3RLQ9	Uncharacterized protein.	PUA domain-containing protein.	0.999
B3RW33_TRIAD	B3RUZ8_TRIAD	B3RW33	B3RUZ8	Uncharacterized protein.	CS domain-containing protein.	0.948
B3RW33_TRIAD	B3RVQ8_TRIAD	B3RW33	B3RVQ8	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
B3RW33_TRIAD	B3S3H1_TRIAD	B3RW33	B3S3H1	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
B3RW33_TRIAD	B3S7P8_TRIAD	B3RW33	B3S7P8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.961