(7 nodes) Mixed, incl. Mitochondrial Uncoupling, and Leucine Rich repeat network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RRX6_TRIAD	WD_REPEATS_REGION domain-containing protein. (382 aa)
	B3RZP4_TRIAD	Uncharacterized protein. (331 aa)
	B3S7I3_TRIAD	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (341 aa)
	B3S7M9_TRIAD	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (297 aa)
	B3SC28_TRIAD	Uncharacterized protein. (1068 aa)
	B3SDA5_TRIAD	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (316 aa)
	B3SF52_TRIAD	Uncharacterized protein. (229 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RRX6_TRIAD	B3SC28_TRIAD	B3RRX6	B3SC28	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.475
B3RRX6_TRIAD	B3SF52_TRIAD	B3RRX6	B3SF52	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.475
B3S7I3_TRIAD	B3S7M9_TRIAD	B3S7I3	B3S7M9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.647
B3S7I3_TRIAD	B3SDA5_TRIAD	B3S7I3	B3SDA5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.451
B3S7M9_TRIAD	B3S7I3_TRIAD	B3S7M9	B3S7I3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.647
B3SC28_TRIAD	B3RRX6_TRIAD	B3SC28	B3RRX6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.475
B3SDA5_TRIAD	B3S7I3_TRIAD	B3SDA5	B3S7I3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.451
B3SF52_TRIAD	B3RRX6_TRIAD	B3SF52	B3RRX6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.475