(38 nodes) Microbody membrane, and Peroxisomal lipid metabolism network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RI22_TRIAD	Uncharacterized protein. (139 aa)
	B3RJ25_TRIAD	Uncharacterized protein. (723 aa)
	B3RKL4_TRIAD	MaoC-like domain-containing protein. (181 aa)
	B3RMX8_TRIAD	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	B3RMX9_TRIAD	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)
	B3RPN3_TRIAD	Uncharacterized protein. (269 aa)
	B3RQH0_TRIAD	ABC transporter domain-containing protein. (608 aa)
	B3RQT0_TRIAD	ACB domain-containing protein. (80 aa)
	B3RRY6_TRIAD	Uncharacterized protein. (774 aa)
	B3RS09_TRIAD	Uncharacterized protein. (231 aa)
	B3RSX4_TRIAD	Uncharacterized protein. (388 aa)
	B3RT97_TRIAD	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (433 aa)
	B3RUL2_TRIAD	ABC transporter domain-containing protein. (754 aa)
	B3RWX6_TRIAD	DUF4097 domain-containing protein. (308 aa)
	B3RXR3_TRIAD	WD_REPEATS_REGION domain-containing protein. (314 aa)
	B3RYU4_TRIAD	Uncharacterized protein. (943 aa)
	B3RYV9_TRIAD	Uncharacterized protein. (500 aa)
	B3RZD4_TRIAD	TPR_REGION domain-containing protein. (645 aa)
	B3RZR8_TRIAD	RING-type domain-containing protein. (300 aa)
	B3S087_TRIAD	Pex14_N domain-containing protein. (347 aa)
	B3S194_TRIAD	Uncharacterized protein. (478 aa)
	B3S1G7_TRIAD	SH3 domain-containing protein. (262 aa)
	B3S271_TRIAD	Uncharacterized protein. (383 aa)
	B3S3Y5_TRIAD	Uncharacterized protein. (298 aa)
	B3S4A2_TRIAD	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (144 aa)
	B3S4X5_TRIAD	SCP2 domain-containing protein. (144 aa)
	B3S4X7_TRIAD	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (534 aa)
	B3S5D4_TRIAD	AAA domain-containing protein; Belongs to the AAA ATPase family. (335 aa)
	B3S5U4_TRIAD	Uncharacterized protein. (600 aa)
	B3S7P9_TRIAD	AAA domain-containing protein; Belongs to the AAA ATPase family. (299 aa)
	B3S8J1_TRIAD	Uncharacterized protein. (203 aa)
	B3S8N9_TRIAD	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family. (575 aa)
	B3SAX0_TRIAD	Peroxisomal membrane protein PEX16. (340 aa)
	B3SDE8_TRIAD	Uncharacterized protein. (584 aa)
	B3SDY6_TRIAD	RING-type domain-containing protein. (290 aa)
	B3SEA1_TRIAD	Uncharacterized protein. (248 aa)
	B3SEA2_TRIAD	Acyl-CoA_dh_M domain-containing protein. (192 aa)
	B3SEJ2_TRIAD	ACOX domain-containing protein. (281 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RI22_TRIAD	B3RKL4_TRIAD	B3RI22	B3RKL4	Uncharacterized protein.	MaoC-like domain-containing protein.	0.423
B3RI22_TRIAD	B3RMX8_TRIAD	B3RI22	B3RMX8	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.512
B3RI22_TRIAD	B3RMX9_TRIAD	B3RI22	B3RMX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.512
B3RI22_TRIAD	B3RQH0_TRIAD	B3RI22	B3RQH0	Uncharacterized protein.	ABC transporter domain-containing protein.	0.490
B3RI22_TRIAD	B3RQT0_TRIAD	B3RI22	B3RQT0	Uncharacterized protein.	ACB domain-containing protein.	0.504
B3RI22_TRIAD	B3RS09_TRIAD	B3RI22	B3RS09	Uncharacterized protein.	Uncharacterized protein.	0.955
B3RI22_TRIAD	B3RT97_TRIAD	B3RI22	B3RT97	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.432
B3RI22_TRIAD	B3RUL2_TRIAD	B3RI22	B3RUL2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.647
B3RI22_TRIAD	B3RWX6_TRIAD	B3RI22	B3RWX6	Uncharacterized protein.	DUF4097 domain-containing protein.	0.685
B3RI22_TRIAD	B3RXR3_TRIAD	B3RI22	B3RXR3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.541
B3RI22_TRIAD	B3RYU4_TRIAD	B3RI22	B3RYU4	Uncharacterized protein.	Uncharacterized protein.	0.651
B3RI22_TRIAD	B3RZD4_TRIAD	B3RI22	B3RZD4	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.563
B3RI22_TRIAD	B3RZR8_TRIAD	B3RI22	B3RZR8	Uncharacterized protein.	RING-type domain-containing protein.	0.615
B3RI22_TRIAD	B3S087_TRIAD	B3RI22	B3S087	Uncharacterized protein.	Pex14_N domain-containing protein.	0.790
B3RI22_TRIAD	B3S1G7_TRIAD	B3RI22	B3S1G7	Uncharacterized protein.	SH3 domain-containing protein.	0.884
B3RI22_TRIAD	B3S271_TRIAD	B3RI22	B3S271	Uncharacterized protein.	Uncharacterized protein.	0.802
B3RI22_TRIAD	B3S4A2_TRIAD	B3RI22	B3S4A2	Uncharacterized protein.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.580
B3RI22_TRIAD	B3S5D4_TRIAD	B3RI22	B3S5D4	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.597
B3RI22_TRIAD	B3S7P9_TRIAD	B3RI22	B3S7P9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.590
B3RI22_TRIAD	B3S8J1_TRIAD	B3RI22	B3S8J1	Uncharacterized protein.	Uncharacterized protein.	0.847