(23 nodes) Short-chain dehydrogenase/reductase, conserved site, and Synthesis of Lipoxins (LX) network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RJ90_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (295 aa)
	B3RJC7_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (292 aa)
	B3RPX7_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (232 aa)
	B3RRH8_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)
	B3RSB6_TRIAD	Uncharacterized protein. (551 aa)
	B3RT60_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (322 aa)
	B3RT65_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (234 aa)
	B3RT66_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
	B3RT67_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (287 aa)
	B3RTW4_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (324 aa)
	B3RV42_TRIAD	Uncharacterized protein. (254 aa)
	B3RVX9_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (263 aa)
	B3RVY5_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)
	B3RWK8_TRIAD	Uncharacterized protein; Belongs to the cytochrome P450 family. (420 aa)
	B3RXJ3_TRIAD	Uncharacterized protein. (251 aa)
	B3RXK8_TRIAD	Uncharacterized protein. (244 aa)
	B3RXQ2_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (315 aa)
	B3RZI9_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
	B3S6T5_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (303 aa)
	B3S7M7_TRIAD	Uncharacterized protein. (254 aa)
	B3S9I0_TRIAD	Uncharacterized protein. (289 aa)
	B3SD14_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (309 aa)
	B3SD16_TRIAD	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (310 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJ90_TRIAD	B3RSB6_TRIAD	B3RJ90	B3RSB6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.677
B3RJ90_TRIAD	B3RWK8_TRIAD	B3RJ90	B3RWK8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.684
B3RJC7_TRIAD	B3RSB6_TRIAD	B3RJC7	B3RSB6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.677
B3RJC7_TRIAD	B3RWK8_TRIAD	B3RJC7	B3RWK8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.684
B3RPX7_TRIAD	B3RVX9_TRIAD	B3RPX7	B3RVX9	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.500
B3RPX7_TRIAD	B3RVY5_TRIAD	B3RPX7	B3RVY5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.523
B3RPX7_TRIAD	B3RZI9_TRIAD	B3RPX7	B3RZI9	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.443
B3RPX7_TRIAD	B3S6T5_TRIAD	B3RPX7	B3S6T5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.410
B3RRH8_TRIAD	B3RSB6_TRIAD	B3RRH8	B3RSB6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.677
B3RRH8_TRIAD	B3RWK8_TRIAD	B3RRH8	B3RWK8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.684
B3RRH8_TRIAD	B3RZI9_TRIAD	B3RRH8	B3RZI9	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
B3RSB6_TRIAD	B3RJ90_TRIAD	B3RSB6	B3RJ90	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.677
B3RSB6_TRIAD	B3RJC7_TRIAD	B3RSB6	B3RJC7	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.677
B3RSB6_TRIAD	B3RRH8_TRIAD	B3RSB6	B3RRH8	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.677
B3RSB6_TRIAD	B3RT60_TRIAD	B3RSB6	B3RT60	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
B3RSB6_TRIAD	B3RT65_TRIAD	B3RSB6	B3RT65	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.650
B3RSB6_TRIAD	B3RT66_TRIAD	B3RSB6	B3RT66	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.650
B3RSB6_TRIAD	B3RT67_TRIAD	B3RSB6	B3RT67	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.650
B3RSB6_TRIAD	B3RV42_TRIAD	B3RSB6	B3RV42	Uncharacterized protein.	Uncharacterized protein.	0.911
B3RSB6_TRIAD	B3RWK8_TRIAD	B3RSB6	B3RWK8	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.901