(13 nodes) PML body network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3S4V7_TRIAD	RING-type domain-containing protein. (463 aa)
	B3S7L6_TRIAD	Uncharacterized protein. (820 aa)
	B3S8C3_TRIAD	SMC_N domain-containing protein. (951 aa)
	B3S8C6_TRIAD	SMC_N domain-containing protein. (873 aa)
	B3SCL3_TRIAD	Small ubiquitin-related modifier. (69 aa)
	B3RL41_TRIAD	Uncharacterized protein. (205 aa)
	B3RL42_TRIAD	Uncharacterized protein. (314 aa)
	B3RMK0_TRIAD	Predicted protein. (213 aa)
	B3RNE4_TRIAD	Uncharacterized protein. (414 aa)
	B3RPL5_TRIAD	Uncharacterized protein. (1339 aa)
	B3RV77_TRIAD	Predicted protein. (198 aa)
	B3S2X9_TRIAD	RING-type domain-containing protein. (177 aa)
	B3S4K2_TRIAD	Uncharacterized protein. (338 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RL41_TRIAD	B3RL42_TRIAD	B3RL41	B3RL42	Uncharacterized protein.	Uncharacterized protein.	0.832
B3RL42_TRIAD	B3RL41_TRIAD	B3RL42	B3RL41	Uncharacterized protein.	Uncharacterized protein.	0.832
B3RMK0_TRIAD	B3SCL3_TRIAD	B3RMK0	B3SCL3	Predicted protein.	Small ubiquitin-related modifier.	0.543
B3RNE4_TRIAD	B3S2X9_TRIAD	B3RNE4	B3S2X9	Uncharacterized protein.	RING-type domain-containing protein.	0.636
B3RNE4_TRIAD	B3SCL3_TRIAD	B3RNE4	B3SCL3	Uncharacterized protein.	Small ubiquitin-related modifier.	0.968
B3S2X9_TRIAD	B3RNE4_TRIAD	B3S2X9	B3RNE4	RING-type domain-containing protein.	Uncharacterized protein.	0.636
B3S2X9_TRIAD	B3SCL3_TRIAD	B3S2X9	B3SCL3	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.819
B3S4V7_TRIAD	B3SCL3_TRIAD	B3S4V7	B3SCL3	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.656
B3S8C3_TRIAD	B3S8C6_TRIAD	B3S8C3	B3S8C6	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.543
B3S8C3_TRIAD	B3SCL3_TRIAD	B3S8C3	B3SCL3	SMC_N domain-containing protein.	Small ubiquitin-related modifier.	0.658
B3S8C6_TRIAD	B3S8C3_TRIAD	B3S8C6	B3S8C3	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.543
B3S8C6_TRIAD	B3SCL3_TRIAD	B3S8C6	B3SCL3	SMC_N domain-containing protein.	Small ubiquitin-related modifier.	0.658
B3SCL3_TRIAD	B3RMK0_TRIAD	B3SCL3	B3RMK0	Small ubiquitin-related modifier.	Predicted protein.	0.543
B3SCL3_TRIAD	B3RNE4_TRIAD	B3SCL3	B3RNE4	Small ubiquitin-related modifier.	Uncharacterized protein.	0.968
B3SCL3_TRIAD	B3S2X9_TRIAD	B3SCL3	B3S2X9	Small ubiquitin-related modifier.	RING-type domain-containing protein.	0.819
B3SCL3_TRIAD	B3S4V7_TRIAD	B3SCL3	B3S4V7	Small ubiquitin-related modifier.	RING-type domain-containing protein.	0.656
B3SCL3_TRIAD	B3S8C3_TRIAD	B3SCL3	B3S8C3	Small ubiquitin-related modifier.	SMC_N domain-containing protein.	0.658
B3SCL3_TRIAD	B3S8C6_TRIAD	B3SCL3	B3S8C6	Small ubiquitin-related modifier.	SMC_N domain-containing protein.	0.658