(55 nodes) Regulation of lipid metabolic process network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3SD02_TRIAD	SAM domain-containing protein. (409 aa)
	B3SCV0_TRIAD	Sortilin. (875 aa)
	B3SCH5_TRIAD	Phorbol-ester/DAG-type domain-containing protein. (171 aa)
	B3SAT1_TRIAD	Uncharacterized protein. (592 aa)
	B3SAS9_TRIAD	Uncharacterized protein. (435 aa)
	B3SAS8_TRIAD	Uncharacterized protein. (367 aa)
	B3S043_TRIAD	FCP1 homology domain-containing protein. (183 aa)
	B3RJ69_TRIAD	DAGKc domain-containing protein. (536 aa)
	B3RJ95_TRIAD	PNPLA domain-containing protein. (254 aa)
	B3RL02_TRIAD	WD_REPEATS_REGION domain-containing protein. (490 aa)
	B3RPL9_TRIAD	Protein-serine/threonine kinase. (399 aa)
	B3RPM0_TRIAD	Protein-serine/threonine kinase. (404 aa)
	B3RPZ2_TRIAD	DAGKc domain-containing protein. (348 aa)
	B3RQJ7_TRIAD	Uncharacterized protein. (1202 aa)
	B3RQQ3_TRIAD	PIPK domain-containing protein. (393 aa)
	B3RZX8_TRIAD	Uncharacterized protein. (1135 aa)
	B3RZQ0_TRIAD	Uncharacterized protein. (1269 aa)
	B3RZ52_TRIAD	Uncharacterized protein. (138 aa)
	B3RYN4_TRIAD	Uncharacterized protein. (363 aa)
	B3RYH8_TRIAD	Uncharacterized protein. (167 aa)
	B3RYC5_TRIAD	Uncharacterized protein. (656 aa)
	B3RVJ3_TRIAD	Uncharacterized protein. (105 aa)
	B3RV13_TRIAD	Uncharacterized protein. (690 aa)
	B3RU73_TRIAD	Beta-lactamase domain-containing protein. (418 aa)
	B3RTM0_TRIAD	Flavin-containing monooxygenase. (454 aa)
	B3RSS8_TRIAD	PHB domain-containing protein. (411 aa)
	B3RRA1_TRIAD	Saposin B-type domain-containing protein. (265 aa)
	B3RR99_TRIAD	Uncharacterized protein. (304 aa)
	B3RR01_TRIAD	BRCT domain-containing protein. (1270 aa)
	B3SAT0_TRIAD	Uncharacterized protein. (372 aa)
	B3RQQ9_TRIAD	Uncharacterized protein. (158 aa)
	B3SAR7_TRIAD	Uncharacterized protein. (346 aa)
	B3SAG3_TRIAD	Uncharacterized protein. (483 aa)
	B3SA71_TRIAD	Dimethylaniline monooxygenase [N-oxide-forming]. (542 aa)
	B3SA56_TRIAD	Predicted protein. (281 aa)
	B3SA18_TRIAD	KH domain-containing protein. (123 aa)
	B3S9X5_TRIAD	Uncharacterized protein. (152 aa)
	B3S788_TRIAD	AB hydrolase-1 domain-containing protein. (494 aa)
	B3SEH1_TRIAD	PHB domain-containing protein. (314 aa)
	B3S723_TRIAD	AB hydrolase-1 domain-containing protein. (473 aa)
	B3S707_TRIAD	AB hydrolase-1 domain-containing protein. (439 aa)
	B3S706_TRIAD	AB hydrolase-1 domain-containing protein. (514 aa)
	B3S705_TRIAD	AB hydrolase-1 domain-containing protein. (559 aa)
	B3S6A5_TRIAD	Uncharacterized protein. (881 aa)
	B3S649_TRIAD	Uncharacterized protein. (265 aa)
	B3S5U4_TRIAD	Uncharacterized protein. (600 aa)
	B3S5B7_TRIAD	Dimethylaniline monooxygenase [N-oxide-forming]. (528 aa)
	B3S5B6_TRIAD	Dimethylaniline monooxygenase [N-oxide-forming]. (540 aa)
	B3S5B5_TRIAD	Dimethylaniline monooxygenase [N-oxide-forming]. (527 aa)
	B3S5B2_TRIAD	Predicted protein. (952 aa)
	B3S587_TRIAD	Uncharacterized protein. (389 aa)
	B3S3R1_TRIAD	Uncharacterized protein. (544 aa)
	B3S340_TRIAD	Sortilin. (490 aa)
	B3S339_TRIAD	Sortilin. (815 aa)
	B3SD76_TRIAD	BHLH domain-containing protein. (992 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJ69_TRIAD	B3RPZ2_TRIAD	B3RJ69	B3RPZ2	DAGKc domain-containing protein.	DAGKc domain-containing protein.	0.904
B3RL02_TRIAD	B3RZX8_TRIAD	B3RL02	B3RZX8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.891
B3RL02_TRIAD	B3SAG3_TRIAD	B3RL02	B3SAG3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.849
B3RL02_TRIAD	B3SCH5_TRIAD	B3RL02	B3SCH5	WD_REPEATS_REGION domain-containing protein.	Phorbol-ester/DAG-type domain-containing protein.	0.486
B3RPL9_TRIAD	B3S5U4_TRIAD	B3RPL9	B3S5U4	Protein-serine/threonine kinase.	Uncharacterized protein.	0.416
B3RPM0_TRIAD	B3S5U4_TRIAD	B3RPM0	B3S5U4	Protein-serine/threonine kinase.	Uncharacterized protein.	0.416
B3RPZ2_TRIAD	B3RJ69_TRIAD	B3RPZ2	B3RJ69	DAGKc domain-containing protein.	DAGKc domain-containing protein.	0.904
B3RQJ7_TRIAD	B3SD76_TRIAD	B3RQJ7	B3SD76	Uncharacterized protein.	BHLH domain-containing protein.	0.985
B3RQQ3_TRIAD	B3S6A5_TRIAD	B3RQQ3	B3S6A5	PIPK domain-containing protein.	Uncharacterized protein.	0.911
B3RVJ3_TRIAD	B3S043_TRIAD	B3RVJ3	B3S043	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.984
B3RZX8_TRIAD	B3RL02_TRIAD	B3RZX8	B3RL02	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.891
B3RZX8_TRIAD	B3SAG3_TRIAD	B3RZX8	B3SAG3	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RZX8_TRIAD	B3SCH5_TRIAD	B3RZX8	B3SCH5	Uncharacterized protein.	Phorbol-ester/DAG-type domain-containing protein.	0.853
B3S043_TRIAD	B3RVJ3_TRIAD	B3S043	B3RVJ3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.984
B3S3R1_TRIAD	B3S587_TRIAD	B3S3R1	B3S587	Uncharacterized protein.	Uncharacterized protein.	0.544
B3S587_TRIAD	B3S3R1_TRIAD	B3S587	B3S3R1	Uncharacterized protein.	Uncharacterized protein.	0.544
B3S5U4_TRIAD	B3RPL9_TRIAD	B3S5U4	B3RPL9	Uncharacterized protein.	Protein-serine/threonine kinase.	0.416
B3S5U4_TRIAD	B3RPM0_TRIAD	B3S5U4	B3RPM0	Uncharacterized protein.	Protein-serine/threonine kinase.	0.416
B3S5U4_TRIAD	B3S705_TRIAD	B3S5U4	B3S705	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.656
B3S5U4_TRIAD	B3S706_TRIAD	B3S5U4	B3S706	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.656