(32 nodes) Regulation of double-strand break repair network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RSK0_TRIAD	Predicted protein. (1507 aa)
	B3RTH9_TRIAD	YL1_C domain-containing protein. (445 aa)
	B3RT31_TRIAD	Uncharacterized protein. (1137 aa)
	B3RVZ5_TRIAD	Uncharacterized protein. (896 aa)
	B3RX95_TRIAD	Uncharacterized protein. (582 aa)
	B3RXL1_TRIAD	Uncharacterized protein. (388 aa)
	B3S048_TRIAD	Poly [ADP-ribose] polymerase. (451 aa)
	B3S0A5_TRIAD	Uncharacterized protein. (240 aa)
	B3S1S2_TRIAD	Uncharacterized protein. (713 aa)
	B3S209_TRIAD	Uncharacterized protein. (2571 aa)
	B3S228_TRIAD	DEK_C domain-containing protein. (306 aa)
	B3S2Q7_TRIAD	Helicase ATP-binding domain-containing protein. (702 aa)
	B3S344_TRIAD	Predicted protein. (830 aa)
	B3S351_TRIAD	Uncharacterized protein. (958 aa)
	B3S3D3_TRIAD	Predicted protein. (465 aa)
	B3S4V5_TRIAD	Uncharacterized protein. (123 aa)
	B3S5Q9_TRIAD	Poly [ADP-ribose] polymerase. (128 aa)
	B3S6C0_TRIAD	Helicase ATP-binding domain-containing protein. (995 aa)
	B3S721_TRIAD	Predicted protein. (856 aa)
	B3S7P8_TRIAD	WD_REPEATS_REGION domain-containing protein. (422 aa)
	B3S8K1_TRIAD	Enhancer of polycomb-like protein. (196 aa)
	B3S8K2_TRIAD	Uncharacterized protein. (54 aa)
	B3S9Y7_TRIAD	Uncharacterized protein. (151 aa)
	B3SE35_TRIAD	Uncharacterized protein. (130 aa)
	B3RJ86_TRIAD	Fork-head domain-containing protein. (90 aa)
	B3RJD3_TRIAD	Predicted protein. (907 aa)
	B3RM01_TRIAD	Uncharacterized protein. (1627 aa)
	B3RPH8_TRIAD	Deacetylase sirtuin-type domain-containing protein. (417 aa)
	B3RPR1_TRIAD	Uncharacterized protein. (1207 aa)
	B3RQ94_TRIAD	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4042 aa)
	B3RR69_TRIAD	FAM35_C domain-containing protein. (601 aa)
	B3RRH5_TRIAD	ENDO3c domain-containing protein. (308 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJD3_TRIAD	B3RM01_TRIAD	B3RJD3	B3RM01	Predicted protein.	Uncharacterized protein.	0.818
B3RJD3_TRIAD	B3RSK0_TRIAD	B3RJD3	B3RSK0	Predicted protein.	Predicted protein.	0.924
B3RJD3_TRIAD	B3RXL1_TRIAD	B3RJD3	B3RXL1	Predicted protein.	Uncharacterized protein.	0.669
B3RJD3_TRIAD	B3S2Q7_TRIAD	B3RJD3	B3S2Q7	Predicted protein.	Helicase ATP-binding domain-containing protein.	0.985
B3RJD3_TRIAD	B3S6C0_TRIAD	B3RJD3	B3S6C0	Predicted protein.	Helicase ATP-binding domain-containing protein.	0.985
B3RM01_TRIAD	B3RJD3_TRIAD	B3RM01	B3RJD3	Uncharacterized protein.	Predicted protein.	0.818
B3RM01_TRIAD	B3S209_TRIAD	B3RM01	B3S209	Uncharacterized protein.	Uncharacterized protein.	0.993
B3RPR1_TRIAD	B3S228_TRIAD	B3RPR1	B3S228	Uncharacterized protein.	DEK_C domain-containing protein.	0.599
B3RQ94_TRIAD	B3RSK0_TRIAD	B3RQ94	B3RSK0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Predicted protein.	0.724
B3RR69_TRIAD	B3RSK0_TRIAD	B3RR69	B3RSK0	FAM35_C domain-containing protein.	Predicted protein.	0.414
B3RR69_TRIAD	B3S0A5_TRIAD	B3RR69	B3S0A5	FAM35_C domain-containing protein.	Uncharacterized protein.	0.918
B3RSK0_TRIAD	B3RJD3_TRIAD	B3RSK0	B3RJD3	Predicted protein.	Predicted protein.	0.924
B3RSK0_TRIAD	B3RQ94_TRIAD	B3RSK0	B3RQ94	Predicted protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.724
B3RSK0_TRIAD	B3RR69_TRIAD	B3RSK0	B3RR69	Predicted protein.	FAM35_C domain-containing protein.	0.414
B3RSK0_TRIAD	B3RXL1_TRIAD	B3RSK0	B3RXL1	Predicted protein.	Uncharacterized protein.	0.705
B3RSK0_TRIAD	B3S209_TRIAD	B3RSK0	B3S209	Predicted protein.	Uncharacterized protein.	0.444
B3RTH9_TRIAD	B3S344_TRIAD	B3RTH9	B3S344	YL1_C domain-containing protein.	Predicted protein.	0.763
B3RTH9_TRIAD	B3S4V5_TRIAD	B3RTH9	B3S4V5	YL1_C domain-containing protein.	Uncharacterized protein.	0.935
B3RTH9_TRIAD	B3S8K1_TRIAD	B3RTH9	B3S8K1	YL1_C domain-containing protein.	Enhancer of polycomb-like protein.	0.460
B3RTH9_TRIAD	B3S8K2_TRIAD	B3RTH9	B3S8K2	YL1_C domain-containing protein.	Uncharacterized protein.	0.460