(17 nodes) Myofibril network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3SA10_TRIAD	TPR_REGION domain-containing protein. (915 aa)
	B3RI12_TRIAD	Uncharacterized protein. (309 aa)
	B3RQJ6_TRIAD	Uncharacterized protein. (276 aa)
	B3RR78_TRIAD	HP domain-containing protein. (1548 aa)
	B3RRG1_TRIAD	Uncharacterized protein. (299 aa)
	B3RRM6_TRIAD	ANK_REP_REGION domain-containing protein. (125 aa)
	B3RS58_TRIAD	Uncharacterized protein. (490 aa)
	B3RSS9_TRIAD	Myotubularin phosphatase domain-containing protein. (871 aa)
	B3RUU2_TRIAD	Uncharacterized protein. (326 aa)
	B3RV23_TRIAD	Uncharacterized protein. (72 aa)
	B3RVR5_TRIAD	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (286 aa)
	B3RY23_TRIAD	Uncharacterized protein. (305 aa)
	B3S0V2_TRIAD	Uncharacterized protein. (880 aa)
	B3S1U9_TRIAD	Uncharacterized protein. (168 aa)
	B3S2K1_TRIAD	Uncharacterized protein. (1149 aa)
	B3SEI4_TRIAD	ANK_REP_REGION domain-containing protein. (92 aa)
	B3S792_TRIAD	Uncharacterized protein. (432 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RI12_TRIAD	B3RR78_TRIAD	B3RI12	B3RR78	Uncharacterized protein.	HP domain-containing protein.	0.554
B3RI12_TRIAD	B3RUU2_TRIAD	B3RI12	B3RUU2	Uncharacterized protein.	Uncharacterized protein.	0.573
B3RI12_TRIAD	B3S0V2_TRIAD	B3RI12	B3S0V2	Uncharacterized protein.	Uncharacterized protein.	0.803
B3RR78_TRIAD	B3RI12_TRIAD	B3RR78	B3RI12	HP domain-containing protein.	Uncharacterized protein.	0.554
B3RRG1_TRIAD	B3S792_TRIAD	B3RRG1	B3S792	Uncharacterized protein.	Uncharacterized protein.	0.427
B3RUU2_TRIAD	B3RI12_TRIAD	B3RUU2	B3RI12	Uncharacterized protein.	Uncharacterized protein.	0.573
B3S0V2_TRIAD	B3RI12_TRIAD	B3S0V2	B3RI12	Uncharacterized protein.	Uncharacterized protein.	0.803
B3S0V2_TRIAD	B3S792_TRIAD	B3S0V2	B3S792	Uncharacterized protein.	Uncharacterized protein.	0.580
B3S792_TRIAD	B3RRG1_TRIAD	B3S792	B3RRG1	Uncharacterized protein.	Uncharacterized protein.	0.427
B3S792_TRIAD	B3S0V2_TRIAD	B3S792	B3S0V2	Uncharacterized protein.	Uncharacterized protein.	0.580