(45 nodes) Chromosomal region network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3SBM1_TRIAD	Uncharacterized protein. (140 aa)
	B3SCV9_TRIAD	Predicted protein. (843 aa)
	B3SDK9_TRIAD	NB-ARC domain-containing protein. (811 aa)
	B3RJ62_TRIAD	Uncharacterized protein. (725 aa)
	B3SE76_TRIAD	Uncharacterized protein. (137 aa)
	B3RJI6_TRIAD	G-patch domain-containing protein. (256 aa)
	B3RJJ8_TRIAD	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (784 aa)
	B3RKI1_TRIAD	Uncharacterized protein. (740 aa)
	B3RL06_TRIAD	Uncharacterized protein. (1970 aa)
	B3RLD9_TRIAD	Uncharacterized protein. (133 aa)
	B3RMU8_TRIAD	Uncharacterized protein. (420 aa)
	B3RPD8_TRIAD	Lactamase_B domain-containing protein. (306 aa)
	B3RPJ9_TRIAD	Histone acetyltransferase type B catalytic subunit. (399 aa)
	B3RPM4_TRIAD	Uncharacterized protein. (536 aa)
	B3RPP1_TRIAD	DUF5595 domain-containing protein. (582 aa)
	B3RQ12_TRIAD	Mis18 domain-containing protein. (243 aa)
	B3RQV4_TRIAD	Rif1_N domain-containing protein. (1621 aa)
	B3RR21_TRIAD	Uncharacterized protein. (353 aa)
	B3RR50_TRIAD	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	B3RR65_TRIAD	Uncharacterized protein. (263 aa)
	B3RSA2_TRIAD	Predicted protein. (1491 aa)
	B3RTA2_TRIAD	Uncharacterized protein. (243 aa)
	B3RUB4_TRIAD	Predicted protein. (156 aa)
	B3RWG4_TRIAD	Uncharacterized protein. (73 aa)
	B3RX95_TRIAD	Uncharacterized protein. (582 aa)
	B3RXI7_TRIAD	Uncharacterized protein. (180 aa)
	B3RYC0_TRIAD	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (328 aa)
	B3RYH6_TRIAD	Uncharacterized protein. (807 aa)
	B3RZ07_TRIAD	Uncharacterized protein. (573 aa)
	B3RZ53_TRIAD	Predicted protein. (447 aa)
	B3S1J1_TRIAD	Predicted protein. (1096 aa)
	B3S2I0_TRIAD	CENP-C_C domain-containing protein. (565 aa)
	B3S2M3_TRIAD	Uncharacterized protein. (838 aa)
	B3S2R5_TRIAD	Uncharacterized protein. (599 aa)
	B3S4F4_TRIAD	Protein kinase domain-containing protein. (177 aa)
	B3S5I1_TRIAD	Uncharacterized protein. (137 aa)
	B3S645_TRIAD	Uncharacterized protein. (142 aa)
	B3S689_TRIAD	Uncharacterized protein. (232 aa)
	B3S6F0_TRIAD	Uncharacterized protein. (1760 aa)
	B3S837_TRIAD	Predicted protein. (673 aa)
	B3S8C5_TRIAD	OB domain-containing protein. (313 aa)
	B3S8X5_TRIAD	DRMBL domain-containing protein. (375 aa)
	B3SB24_TRIAD	Uncharacterized protein. (2662 aa)
	B3SB76_TRIAD	Predicted protein. (189 aa)
	B3SBH4_TRIAD	N-acetyltransferase domain-containing protein. (279 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJ62_TRIAD	B3S8C5_TRIAD	B3RJ62	B3S8C5	Uncharacterized protein.	OB domain-containing protein.	0.609
B3RJ62_TRIAD	B3SBM1_TRIAD	B3RJ62	B3SBM1	Uncharacterized protein.	Uncharacterized protein.	0.841
B3RKI1_TRIAD	B3RPP1_TRIAD	B3RKI1	B3RPP1	Uncharacterized protein.	DUF5595 domain-containing protein.	0.703
B3RKI1_TRIAD	B3RR21_TRIAD	B3RKI1	B3RR21	Uncharacterized protein.	Uncharacterized protein.	0.799
B3RKI1_TRIAD	B3RR65_TRIAD	B3RKI1	B3RR65	Uncharacterized protein.	Uncharacterized protein.	0.624
B3RKI1_TRIAD	B3S4F4_TRIAD	B3RKI1	B3S4F4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.812
B3RKI1_TRIAD	B3S6F0_TRIAD	B3RKI1	B3S6F0	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RL06_TRIAD	B3RMU8_TRIAD	B3RL06	B3RMU8	Uncharacterized protein.	Uncharacterized protein.	0.908
B3RL06_TRIAD	B3RPP1_TRIAD	B3RL06	B3RPP1	Uncharacterized protein.	DUF5595 domain-containing protein.	0.982
B3RL06_TRIAD	B3S4F4_TRIAD	B3RL06	B3S4F4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.781
B3RLD9_TRIAD	B3RSA2_TRIAD	B3RLD9	B3RSA2	Uncharacterized protein.	Predicted protein.	0.540
B3RLD9_TRIAD	B3RX95_TRIAD	B3RLD9	B3RX95	Uncharacterized protein.	Uncharacterized protein.	0.540
B3RMU8_TRIAD	B3RL06_TRIAD	B3RMU8	B3RL06	Uncharacterized protein.	Uncharacterized protein.	0.908
B3RMU8_TRIAD	B3RPP1_TRIAD	B3RMU8	B3RPP1	Uncharacterized protein.	DUF5595 domain-containing protein.	0.999
B3RMU8_TRIAD	B3RQ12_TRIAD	B3RMU8	B3RQ12	Uncharacterized protein.	Mis18 domain-containing protein.	0.561
B3RMU8_TRIAD	B3RR21_TRIAD	B3RMU8	B3RR21	Uncharacterized protein.	Uncharacterized protein.	0.807
B3RMU8_TRIAD	B3RR65_TRIAD	B3RMU8	B3RR65	Uncharacterized protein.	Uncharacterized protein.	0.777
B3RMU8_TRIAD	B3RTA2_TRIAD	B3RMU8	B3RTA2	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RMU8_TRIAD	B3RUB4_TRIAD	B3RMU8	B3RUB4	Uncharacterized protein.	Predicted protein.	0.853
B3RMU8_TRIAD	B3RXI7_TRIAD	B3RMU8	B3RXI7	Uncharacterized protein.	Uncharacterized protein.	0.902