(11 nodes) Spectrin repeat network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3S1H0_TRIAD	GAR domain-containing protein. (1324 aa)
	B3S0V2_TRIAD	Uncharacterized protein. (880 aa)
	B3SAU0_TRIAD	Uncharacterized protein. (1964 aa)
	B3SAU1_TRIAD	Uncharacterized protein. (2526 aa)
	B3SCB9_TRIAD	Uncharacterized protein. (3527 aa)
	B3SF03_TRIAD	Uncharacterized protein. (459 aa)
	B3RRW8_TRIAD	Uncharacterized protein. (2678 aa)
	B3SAT8_TRIAD	Uncharacterized protein. (2211 aa)
	B3S726_TRIAD	Uncharacterized protein. (773 aa)
	B3S6I6_TRIAD	Uncharacterized protein. (2413 aa)
	B3S1H1_TRIAD	Calponin-homology (CH) domain-containing protein. (7668 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3S0V2_TRIAD	B3S726_TRIAD	B3S0V2	B3S726	Uncharacterized protein.	Uncharacterized protein.	0.470
B3S1H0_TRIAD	B3S6I6_TRIAD	B3S1H0	B3S6I6	GAR domain-containing protein.	Uncharacterized protein.	0.494
B3S1H1_TRIAD	B3S6I6_TRIAD	B3S1H1	B3S6I6	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.494
B3S6I6_TRIAD	B3S1H0_TRIAD	B3S6I6	B3S1H0	Uncharacterized protein.	GAR domain-containing protein.	0.494
B3S6I6_TRIAD	B3S1H1_TRIAD	B3S6I6	B3S1H1	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.494
B3S6I6_TRIAD	B3SAT8_TRIAD	B3S6I6	B3SAT8	Uncharacterized protein.	Uncharacterized protein.	0.836
B3S6I6_TRIAD	B3SAU0_TRIAD	B3S6I6	B3SAU0	Uncharacterized protein.	Uncharacterized protein.	0.836
B3S6I6_TRIAD	B3SAU1_TRIAD	B3S6I6	B3SAU1	Uncharacterized protein.	Uncharacterized protein.	0.836
B3S6I6_TRIAD	B3SCB9_TRIAD	B3S6I6	B3SCB9	Uncharacterized protein.	Uncharacterized protein.	0.836
B3S6I6_TRIAD	B3SF03_TRIAD	B3S6I6	B3SF03	Uncharacterized protein.	Uncharacterized protein.	0.836
B3S726_TRIAD	B3S0V2_TRIAD	B3S726	B3S0V2	Uncharacterized protein.	Uncharacterized protein.	0.470
B3SAT8_TRIAD	B3S6I6_TRIAD	B3SAT8	B3S6I6	Uncharacterized protein.	Uncharacterized protein.	0.836
B3SAU0_TRIAD	B3S6I6_TRIAD	B3SAU0	B3S6I6	Uncharacterized protein.	Uncharacterized protein.	0.836
B3SAU1_TRIAD	B3S6I6_TRIAD	B3SAU1	B3S6I6	Uncharacterized protein.	Uncharacterized protein.	0.836
B3SCB9_TRIAD	B3S6I6_TRIAD	B3SCB9	B3S6I6	Uncharacterized protein.	Uncharacterized protein.	0.836
B3SF03_TRIAD	B3S6I6_TRIAD	B3SF03	B3S6I6	Uncharacterized protein.	Uncharacterized protein.	0.836