(21 nodes) Endonuclease/exonuclease/phosphatase superfamily network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3SBC8_TRIAD	Rho-GAP domain-containing protein. (627 aa)
	B3S9Q4_TRIAD	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (281 aa)
	B3S7K0_TRIAD	SH2 domain-containing protein. (757 aa)
	B3S704_TRIAD	Uncharacterized protein. (707 aa)
	B3S7K1_TRIAD	SH2 domain-containing protein. (864 aa)
	B3S858_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (284 aa)
	B3SEA0_TRIAD	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (150 aa)
	B3RMK0_TRIAD	Predicted protein. (213 aa)
	B3RM93_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (552 aa)
	B3RKK7_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (378 aa)
	B3RI89_TRIAD	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (527 aa)
	B3S637_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (538 aa)
	B3S5Q6_TRIAD	SAC domain-containing protein. (905 aa)
	B3RY69_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (267 aa)
	B3RWZ2_TRIAD	Deoxyribonuclease; Belongs to the DNase I family. (273 aa)
	B3RWZ1_TRIAD	Deoxyribonuclease; Belongs to the DNase I family. (273 aa)
	B3RUV8_TRIAD	Predicted protein. (402 aa)
	B3S8V9_TRIAD	IPPc domain-containing protein. (300 aa)
	B3RRA6_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (473 aa)
	B3RRA5_TRIAD	Endo/exonuclease/phosphatase domain-containing protein. (451 aa)
	B3RNL4_TRIAD	IPPc domain-containing protein. (330 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RI89_TRIAD	B3S9Q4_TRIAD	B3RI89	B3S9Q4	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.915
B3RI89_TRIAD	B3SEA0_TRIAD	B3RI89	B3SEA0	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.910
B3RNL4_TRIAD	B3S5Q6_TRIAD	B3RNL4	B3S5Q6	IPPc domain-containing protein.	SAC domain-containing protein.	0.944
B3RNL4_TRIAD	B3S8V9_TRIAD	B3RNL4	B3S8V9	IPPc domain-containing protein.	IPPc domain-containing protein.	0.680
B3RNL4_TRIAD	B3SBC8_TRIAD	B3RNL4	B3SBC8	IPPc domain-containing protein.	Rho-GAP domain-containing protein.	0.913
B3S5Q6_TRIAD	B3RNL4_TRIAD	B3S5Q6	B3RNL4	SAC domain-containing protein.	IPPc domain-containing protein.	0.944
B3S5Q6_TRIAD	B3S7K0_TRIAD	B3S5Q6	B3S7K0	SAC domain-containing protein.	SH2 domain-containing protein.	0.961
B3S5Q6_TRIAD	B3S7K1_TRIAD	B3S5Q6	B3S7K1	SAC domain-containing protein.	SH2 domain-containing protein.	0.961
B3S5Q6_TRIAD	B3SBC8_TRIAD	B3S5Q6	B3SBC8	SAC domain-containing protein.	Rho-GAP domain-containing protein.	0.967
B3S7K0_TRIAD	B3S5Q6_TRIAD	B3S7K0	B3S5Q6	SH2 domain-containing protein.	SAC domain-containing protein.	0.961
B3S7K0_TRIAD	B3S7K1_TRIAD	B3S7K0	B3S7K1	SH2 domain-containing protein.	SH2 domain-containing protein.	0.491
B3S7K0_TRIAD	B3S8V9_TRIAD	B3S7K0	B3S8V9	SH2 domain-containing protein.	IPPc domain-containing protein.	0.512
B3S7K1_TRIAD	B3S5Q6_TRIAD	B3S7K1	B3S5Q6	SH2 domain-containing protein.	SAC domain-containing protein.	0.961
B3S7K1_TRIAD	B3S7K0_TRIAD	B3S7K1	B3S7K0	SH2 domain-containing protein.	SH2 domain-containing protein.	0.491
B3S7K1_TRIAD	B3S8V9_TRIAD	B3S7K1	B3S8V9	SH2 domain-containing protein.	IPPc domain-containing protein.	0.512
B3S8V9_TRIAD	B3RNL4_TRIAD	B3S8V9	B3RNL4	IPPc domain-containing protein.	IPPc domain-containing protein.	0.680
B3S8V9_TRIAD	B3S7K0_TRIAD	B3S8V9	B3S7K0	IPPc domain-containing protein.	SH2 domain-containing protein.	0.512
B3S8V9_TRIAD	B3S7K1_TRIAD	B3S8V9	B3S7K1	IPPc domain-containing protein.	SH2 domain-containing protein.	0.512
B3S8V9_TRIAD	B3SBC8_TRIAD	B3S8V9	B3SBC8	IPPc domain-containing protein.	Rho-GAP domain-containing protein.	0.597
B3S9Q4_TRIAD	B3RI89_TRIAD	B3S9Q4	B3RI89	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.915