(12 nodes) Type 1 protein exporter network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3S545_TRIAD	Uncharacterized protein. (799 aa)
	B3RRZ8_TRIAD	Uncharacterized protein. (1253 aa)
	B3RRZ9_TRIAD	Uncharacterized protein. (686 aa)
	B3RYE2_TRIAD	Uncharacterized protein. (683 aa)
	B3S0I3_TRIAD	Uncharacterized protein. (556 aa)
	B3S517_TRIAD	Uncharacterized protein. (660 aa)
	B3S518_TRIAD	Uncharacterized protein. (496 aa)
	B3RM87_TRIAD	Uncharacterized protein. (425 aa)
	B3RM86_TRIAD	Uncharacterized protein. (835 aa)
	B3RLD7_TRIAD	Uncharacterized protein. (668 aa)
	B3SF98_TRIAD	ABC transporter domain-containing protein. (224 aa)
	B3SFA6_TRIAD	ABC transmembrane type-1 domain-containing protein. (223 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RLD7_TRIAD	B3RYE2_TRIAD	B3RLD7	B3RYE2	Uncharacterized protein.	Uncharacterized protein.	0.452
B3RM86_TRIAD	B3RM87_TRIAD	B3RM86	B3RM87	Uncharacterized protein.	Uncharacterized protein.	0.913
B3RM87_TRIAD	B3RM86_TRIAD	B3RM87	B3RM86	Uncharacterized protein.	Uncharacterized protein.	0.913
B3RM87_TRIAD	B3SFA6_TRIAD	B3RM87	B3SFA6	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.580
B3RYE2_TRIAD	B3RLD7_TRIAD	B3RYE2	B3RLD7	Uncharacterized protein.	Uncharacterized protein.	0.452
B3RYE2_TRIAD	B3S0I3_TRIAD	B3RYE2	B3S0I3	Uncharacterized protein.	Uncharacterized protein.	0.452
B3RYE2_TRIAD	B3S517_TRIAD	B3RYE2	B3S517	Uncharacterized protein.	Uncharacterized protein.	0.452
B3RYE2_TRIAD	B3S518_TRIAD	B3RYE2	B3S518	Uncharacterized protein.	Uncharacterized protein.	0.480
B3RYE2_TRIAD	B3S545_TRIAD	B3RYE2	B3S545	Uncharacterized protein.	Uncharacterized protein.	0.452
B3S0I3_TRIAD	B3RYE2_TRIAD	B3S0I3	B3RYE2	Uncharacterized protein.	Uncharacterized protein.	0.452
B3S517_TRIAD	B3RYE2_TRIAD	B3S517	B3RYE2	Uncharacterized protein.	Uncharacterized protein.	0.452
B3S517_TRIAD	B3S518_TRIAD	B3S517	B3S518	Uncharacterized protein.	Uncharacterized protein.	0.903
B3S518_TRIAD	B3RYE2_TRIAD	B3S518	B3RYE2	Uncharacterized protein.	Uncharacterized protein.	0.480
B3S518_TRIAD	B3S517_TRIAD	B3S518	B3S517	Uncharacterized protein.	Uncharacterized protein.	0.903
B3S545_TRIAD	B3RYE2_TRIAD	B3S545	B3RYE2	Uncharacterized protein.	Uncharacterized protein.	0.452
B3SF98_TRIAD	B3SFA6_TRIAD	B3SF98	B3SFA6	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.463
B3SFA6_TRIAD	B3RM87_TRIAD	B3SFA6	B3RM87	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.580
B3SFA6_TRIAD	B3SF98_TRIAD	B3SFA6	B3SF98	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.463