(45 nodes) Anchoring of the basal body to the plasma membrane network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B3RMN8_TRIAD	Uncharacterized protein. (415 aa)
	B3SD46_TRIAD	PCM1_C domain-containing protein. (1371 aa)
	B3SBW0_TRIAD	CAP-Gly domain-containing protein. (1260 aa)
	B3SB51_TRIAD	CYTOSOL_AP domain-containing protein. (493 aa)
	B3SAM9_TRIAD	Uncharacterized protein. (541 aa)
	B3SAC2_TRIAD	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
	B3S820_TRIAD	Uncharacterized protein. (272 aa)
	B3S7A9_TRIAD	LisH domain-containing protein. (350 aa)
	B3S722_TRIAD	Protein kinase domain-containing protein. (284 aa)
	B3S4M3_TRIAD	Tcp10_C domain-containing protein. (295 aa)
	LIS1_TRIAD	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. (409 aa)
	B3S404_TRIAD	HAUS-augmin3 domain-containing protein. (540 aa)
	B3S394_TRIAD	Uncharacterized protein. (940 aa)
	B3S2Q9_TRIAD	Uncharacterized protein. (1149 aa)
	B3S2C5_TRIAD	Uncharacterized protein. (1426 aa)
	B3S246_TRIAD	EB1 C-terminal domain-containing protein. (216 aa)
	B3S012_TRIAD	Uncharacterized protein. (466 aa)
	B3RYN7_TRIAD	Uncharacterized protein. (469 aa)
	B3RYA3_TRIAD	Dynein assembly factor 1, axonemal homolog. (1081 aa)
	B3RY43_TRIAD	FOP_dimer domain-containing protein. (412 aa)
	B3RXE1_TRIAD	Uncharacterized protein. (2360 aa)
	B3RXC0_TRIAD	Uncharacterized protein. (746 aa)
	B3RWX5_TRIAD	Uncharacterized protein. (333 aa)
	B3RVP4_TRIAD	Uncharacterized protein. (359 aa)
	B3RVN5_TRIAD	Uncharacterized protein. (117 aa)
	B3RV94_TRIAD	Uncharacterized protein. (471 aa)
	B3RV61_TRIAD	Uncharacterized protein. (958 aa)
	B3RV57_TRIAD	Uncharacterized protein. (873 aa)
	B3RV53_TRIAD	Uncharacterized protein. (2152 aa)
	B3RUY2_TRIAD	Uncharacterized protein. (283 aa)
	B3RTA3_TRIAD	Uncharacterized protein. (409 aa)
	B3RSH8_TRIAD	HAUS6_N domain-containing protein. (849 aa)
	B3RSA3_TRIAD	SH3 domain-containing protein. (691 aa)
	B3RQA2_TRIAD	Predicted protein. (376 aa)
	B3RPQ7_TRIAD	Uncharacterized protein. (594 aa)
	B3RPP3_TRIAD	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	B3RP92_TRIAD	Uncharacterized protein. (223 aa)
	B3RP31_TRIAD	Uncharacterized protein. (175 aa)
	B3RMY5_TRIAD	Uncharacterized protein. (212 aa)
	B3RME9_TRIAD	Uncharacterized protein. (653 aa)
	B3RL06_TRIAD	Uncharacterized protein. (1970 aa)
	B3RKM0_TRIAD	Uncharacterized protein. (175 aa)
	B3RK68_TRIAD	Protein kinase domain-containing protein. (290 aa)
	B3RJ21_TRIAD	CEP76-C2 domain-containing protein. (628 aa)
	B3RI20_TRIAD	Uncharacterized protein. (495 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RI20_TRIAD	B3RSH8_TRIAD	B3RI20	B3RSH8	Uncharacterized protein.	HAUS6_N domain-containing protein.	0.437
B3RI20_TRIAD	B3RUY2_TRIAD	B3RI20	B3RUY2	Uncharacterized protein.	Uncharacterized protein.	0.539
B3RI20_TRIAD	B3RYA3_TRIAD	B3RI20	B3RYA3	Uncharacterized protein.	Dynein assembly factor 1, axonemal homolog.	0.413
B3RJ21_TRIAD	B3RV53_TRIAD	B3RJ21	B3RV53	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.450
B3RJ21_TRIAD	B3RV57_TRIAD	B3RJ21	B3RV57	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.572
B3RJ21_TRIAD	B3RXE1_TRIAD	B3RJ21	B3RXE1	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.547
B3RJ21_TRIAD	B3S722_TRIAD	B3RJ21	B3S722	CEP76-C2 domain-containing protein.	Protein kinase domain-containing protein.	0.747
B3RJ21_TRIAD	B3SB51_TRIAD	B3RJ21	B3SB51	CEP76-C2 domain-containing protein.	CYTOSOL_AP domain-containing protein.	0.448
B3RKM0_TRIAD	B3RMY5_TRIAD	B3RKM0	B3RMY5	Uncharacterized protein.	Uncharacterized protein.	0.989
B3RKM0_TRIAD	B3RSA3_TRIAD	B3RKM0	B3RSA3	Uncharacterized protein.	SH3 domain-containing protein.	0.649
B3RKM0_TRIAD	B3RV61_TRIAD	B3RKM0	B3RV61	Uncharacterized protein.	Uncharacterized protein.	0.929
B3RKM0_TRIAD	B3S012_TRIAD	B3RKM0	B3S012	Uncharacterized protein.	Uncharacterized protein.	0.667
B3RKM0_TRIAD	B3S2C5_TRIAD	B3RKM0	B3S2C5	Uncharacterized protein.	Uncharacterized protein.	0.894
B3RKM0_TRIAD	B3S2Q9_TRIAD	B3RKM0	B3S2Q9	Uncharacterized protein.	Uncharacterized protein.	0.844
B3RKM0_TRIAD	B3SAM9_TRIAD	B3RKM0	B3SAM9	Uncharacterized protein.	Uncharacterized protein.	0.954
B3RL06_TRIAD	B3RSH8_TRIAD	B3RL06	B3RSH8	Uncharacterized protein.	HAUS6_N domain-containing protein.	0.466
B3RL06_TRIAD	B3S246_TRIAD	B3RL06	B3S246	Uncharacterized protein.	EB1 C-terminal domain-containing protein.	0.973
B3RL06_TRIAD	B3S4M3_TRIAD	B3RL06	B3S4M3	Uncharacterized protein.	Tcp10_C domain-containing protein.	0.547
B3RL06_TRIAD	B3S722_TRIAD	B3RL06	B3S722	Uncharacterized protein.	Protein kinase domain-containing protein.	0.678
B3RL06_TRIAD	LIS1_TRIAD	B3RL06	B3S4I5	Uncharacterized protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.640