(28 nodes) RNA Pol II CTD phosphorylation and interaction with CE network (Trichoplax adhaerens)

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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Predicted Interactions

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Your Input:
	B3RV95_TRIAD	RPOLD domain-containing protein. (274 aa)
	B3RTQ3_TRIAD	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (147 aa)
	B3RID1_TRIAD	Uncharacterized protein. (67 aa)
	B3RJJ7_TRIAD	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
	B3RJT9_TRIAD	RING-type domain-containing protein. (297 aa)
	B3RK02_TRIAD	Uncharacterized protein. (276 aa)
	B3RM26_TRIAD	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1784 aa)
	B3RNR5_TRIAD	CYCLIN domain-containing protein; Belongs to the cyclin family. (246 aa)
	B3RP22_TRIAD	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (452 aa)
	B3RTG7_TRIAD	Uncharacterized protein. (704 aa)
	B3S567_TRIAD	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (509 aa)
	B3S5M8_TRIAD	Uncharacterized protein. (256 aa)
	B3S3Q9_TRIAD	Uncharacterized protein. (210 aa)
	B3S2W9_TRIAD	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1196 aa)
	B3S2B7_TRIAD	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (615 aa)
	B3S0W7_TRIAD	S1 motif domain-containing protein. (172 aa)
	B3S059_TRIAD	R3H domain-containing protein. (231 aa)
	B3S032_TRIAD	RPOL4c domain-containing protein. (106 aa)
	B3RZ73_TRIAD	VWFA domain-containing protein. (353 aa)
	B3RYU5_TRIAD	Helicase ATP-binding domain-containing protein. (720 aa)
	B3RWB8_TRIAD	Uncharacterized protein. (545 aa)
	B3S6B1_TRIAD	RNA_pol_L_2 domain-containing protein. (116 aa)
	B3S7G6_TRIAD	mRNA cap 0 methyltransferase domain-containing protein. (293 aa)
	B3SF17_TRIAD	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (617 aa)
	B3SBS3_TRIAD	Uncharacterized protein. (678 aa)
	B3S9T0_TRIAD	Uncharacterized protein. (95 aa)
	B3S9N4_TRIAD	Uncharacterized protein. (313 aa)
	B3S7I9_TRIAD	Uncharacterized protein. (75 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RID1_TRIAD	B3RJJ7_TRIAD	B3RID1	B3RJJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
B3RID1_TRIAD	B3RJT9_TRIAD	B3RID1	B3RJT9	Uncharacterized protein.	RING-type domain-containing protein.	0.941
B3RID1_TRIAD	B3RK02_TRIAD	B3RID1	B3RK02	Uncharacterized protein.	Uncharacterized protein.	0.941
B3RID1_TRIAD	B3RM26_TRIAD	B3RID1	B3RM26	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B3RID1_TRIAD	B3RNR5_TRIAD	B3RID1	B3RNR5	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.869
B3RID1_TRIAD	B3RP22_TRIAD	B3RID1	B3RP22	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.940
B3RID1_TRIAD	B3RTG7_TRIAD	B3RID1	B3RTG7	Uncharacterized protein.	Uncharacterized protein.	0.941
B3RID1_TRIAD	B3RTQ3_TRIAD	B3RID1	B3RTQ3	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
B3RID1_TRIAD	B3RV95_TRIAD	B3RID1	B3RV95	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
B3RID1_TRIAD	B3RWB8_TRIAD	B3RID1	B3RWB8	Uncharacterized protein.	Uncharacterized protein.	0.940
B3RID1_TRIAD	B3RYU5_TRIAD	B3RID1	B3RYU5	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.947
B3RID1_TRIAD	B3RZ73_TRIAD	B3RID1	B3RZ73	Uncharacterized protein.	VWFA domain-containing protein.	0.941
B3RID1_TRIAD	B3S032_TRIAD	B3RID1	B3S032	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
B3RID1_TRIAD	B3S0W7_TRIAD	B3RID1	B3S0W7	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
B3RID1_TRIAD	B3S2B7_TRIAD	B3RID1	B3S2B7	Uncharacterized protein.	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.	0.690
B3RID1_TRIAD	B3S2W9_TRIAD	B3RID1	B3S2W9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
B3RID1_TRIAD	B3S3Q9_TRIAD	B3RID1	B3S3Q9	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RID1_TRIAD	B3S567_TRIAD	B3RID1	B3S567	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.971
B3RID1_TRIAD	B3S5M8_TRIAD	B3RID1	B3S5M8	Uncharacterized protein.	Uncharacterized protein.	0.954
B3RID1_TRIAD	B3S6B1_TRIAD	B3RID1	B3S6B1	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999