(33 nodes) Nucleotide excision repair network (Trichoplax adhaerens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

Your Input:
	B3RJT9_TRIAD	RING-type domain-containing protein. (297 aa)
	B3RK02_TRIAD	Uncharacterized protein. (276 aa)
	B3RK60_TRIAD	DNA polymerase. (1050 aa)
	B3RLC6_TRIAD	CPSF_A domain-containing protein. (1134 aa)
	B3RM11_TRIAD	Uncharacterized protein. (394 aa)
	B3RMY7_TRIAD	Uncharacterized protein. (448 aa)
	B3RNR5_TRIAD	CYCLIN domain-containing protein; Belongs to the cyclin family. (246 aa)
	B3RP22_TRIAD	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (452 aa)
	B3RPR1_TRIAD	Uncharacterized protein. (1207 aa)
	B3RRD2_TRIAD	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (365 aa)
	B3RTG7_TRIAD	Uncharacterized protein. (704 aa)
	B3RTK6_TRIAD	CULLIN_2 domain-containing protein; Belongs to the cullin family. (729 aa)
	B3RUC9_TRIAD	AAA domain-containing protein. (373 aa)
	B3RWB8_TRIAD	Uncharacterized protein. (545 aa)
	B3RWG1_TRIAD	Ring box protein 1. (99 aa)
	B3RWK4_TRIAD	AAA domain-containing protein. (355 aa)
	B3RXD9_TRIAD	CBFD_NFYB_HMF domain-containing protein. (104 aa)
	B3RYU5_TRIAD	Helicase ATP-binding domain-containing protein. (720 aa)
	B3RZ73_TRIAD	VWFA domain-containing protein. (353 aa)
	B3S104_TRIAD	ERCC4 domain-containing protein. (846 aa)
	B3S218_TRIAD	BRCT domain-containing protein. (716 aa)
	B3S2B3_TRIAD	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
	B3S2J7_TRIAD	Uncharacterized protein. (387 aa)
	B3S4I8_TRIAD	AAA domain-containing protein. (315 aa)
	B3S4Q9_TRIAD	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
	B3S4S1_TRIAD	WD_REPEATS_REGION domain-containing protein. (407 aa)
	B3S6C7_TRIAD	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2239 aa)
	B3S7I9_TRIAD	Uncharacterized protein. (75 aa)
	B3S7X4_TRIAD	XPA_C domain-containing protein. (245 aa)
	B3SBM1_TRIAD	Uncharacterized protein. (140 aa)
	B3SCJ1_TRIAD	Uncharacterized protein. (265 aa)
	B3SD91_TRIAD	Uncharacterized protein. (359 aa)
	B3SDP9_TRIAD	DNA ligase. (707 aa)

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJT9_TRIAD	B3RK02_TRIAD	B3RJT9	B3RK02	RING-type domain-containing protein.	Uncharacterized protein.	0.999
B3RJT9_TRIAD	B3RLC6_TRIAD	B3RJT9	B3RLC6	RING-type domain-containing protein.	CPSF_A domain-containing protein.	0.665
B3RJT9_TRIAD	B3RNR5_TRIAD	B3RJT9	B3RNR5	RING-type domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.999
B3RJT9_TRIAD	B3RP22_TRIAD	B3RJT9	B3RP22	RING-type domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
B3RJT9_TRIAD	B3RPR1_TRIAD	B3RJT9	B3RPR1	RING-type domain-containing protein.	Uncharacterized protein.	0.691
B3RJT9_TRIAD	B3RRD2_TRIAD	B3RJT9	B3RRD2	RING-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.982
B3RJT9_TRIAD	B3RTG7_TRIAD	B3RJT9	B3RTG7	RING-type domain-containing protein.	Uncharacterized protein.	0.999
B3RJT9_TRIAD	B3RTK6_TRIAD	B3RJT9	B3RTK6	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.685
B3RJT9_TRIAD	B3RWB8_TRIAD	B3RJT9	B3RWB8	RING-type domain-containing protein.	Uncharacterized protein.	0.999
B3RJT9_TRIAD	B3RWG1_TRIAD	B3RJT9	B3RWG1	RING-type domain-containing protein.	Ring box protein 1.	0.756
B3RJT9_TRIAD	B3RYU5_TRIAD	B3RJT9	B3RYU5	RING-type domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.999
B3RJT9_TRIAD	B3RZ73_TRIAD	B3RJT9	B3RZ73	RING-type domain-containing protein.	VWFA domain-containing protein.	0.999
B3RJT9_TRIAD	B3S2J7_TRIAD	B3RJT9	B3S2J7	RING-type domain-containing protein.	Uncharacterized protein.	0.719
B3RJT9_TRIAD	B3S4S1_TRIAD	B3RJT9	B3S4S1	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.687
B3RJT9_TRIAD	B3S7I9_TRIAD	B3RJT9	B3S7I9	RING-type domain-containing protein.	Uncharacterized protein.	0.935
B3RJT9_TRIAD	B3S7X4_TRIAD	B3RJT9	B3S7X4	RING-type domain-containing protein.	XPA_C domain-containing protein.	0.741
B3RJT9_TRIAD	B3SD91_TRIAD	B3RJT9	B3SD91	RING-type domain-containing protein.	Uncharacterized protein.	0.735
B3RK02_TRIAD	B3RJT9_TRIAD	B3RK02	B3RJT9	Uncharacterized protein.	RING-type domain-containing protein.	0.999
B3RK02_TRIAD	B3RLC6_TRIAD	B3RK02	B3RLC6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.673
B3RK02_TRIAD	B3RNR5_TRIAD	B3RK02	B3RNR5	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.999