STRINGSTRING
GAA10598.1 GAA10598.1 GAA10605.1 GAA10605.1 GAA10606.1 GAA10606.1 ahpE ahpE GAA10636.1 GAA10636.1 GAA10775.1 GAA10775.1 rpoZ rpoZ sigB sigB GAA11098.1 GAA11098.1 sigA sigA GAA11104.1 GAA11104.1 GAA11105.1 GAA11105.1 GAA11107.1 GAA11107.1 GAA11118.1 GAA11118.1 GAA11214.1 GAA11214.1 GAA11240.1 GAA11240.1 GAA11444.1 GAA11444.1 GAA11469.1 GAA11469.1 GAA11470.1 GAA11470.1 GAA11471.1 GAA11471.1 GAA11472.1 GAA11472.1 GAA11565.1 GAA11565.1 GAA12337.1 GAA12337.1 GAA12338.1 GAA12338.1 GAA12361.1 GAA12361.1 GAA12563.1 GAA12563.1 whiB whiB GAA13022.1 GAA13022.1 hup hup whiB-2 whiB-2 GAA13394.1 GAA13394.1 GAA13395.1 GAA13395.1 GAA13396.1 GAA13396.1 GAA13397.1 GAA13397.1 GAA13415.1 GAA13415.1 nucS nucS GAA13903.1 GAA13903.1 whiB-4 whiB-4 whiB-5 whiB-5 GAA14005.1 GAA14005.1 GAA14006.1 GAA14006.1 RsrA RsrA sigH sigH YbaK YbaK GAA14010.1 GAA14010.1 rbpA rbpA ppm1 ppm1 lnt lnt GAA14308.1 GAA14308.1 GAA14309.1 GAA14309.1 GAA14322.1 GAA14322.1 tatC tatC tatA tatA pafC pafC pafB pafB pafA pafA prcA prcA prcB prcB pup pup pup-2 pup-2 arc arc GAA14335.1 GAA14335.1 GAA14336.1 GAA14336.1 GAA14337.1 GAA14337.1 GAA14464.1 GAA14464.1 whiB-6 whiB-6 GAA14697.1 GAA14697.1 GAA14698.1 GAA14698.1 GAA14699.1 GAA14699.1 GAA14700.1 GAA14700.1 GAA14801.1 GAA14801.1 GAA14839.1 GAA14839.1 GAA14840.1 GAA14840.1 GAA14841.1 GAA14841.1 GAA15144.1 GAA15144.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GAA10598.1Hypothetical protein. (172 aa)
GAA10605.1Hypothetical protein. (186 aa)
GAA10606.1Hypothetical protein. (142 aa)
ahpEPeroxiredoxin AhpE. (160 aa)
GAA10636.1Hypothetical protein. (247 aa)
GAA10775.1Hypothetical protein. (220 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (99 aa)
sigBRNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (338 aa)
GAA11098.1Hypothetical protein. (585 aa)
sigARNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (470 aa)
GAA11104.1Hypothetical protein. (99 aa)
GAA11105.1Hypothetical protein. (184 aa)
GAA11107.1Hypothetical protein. (288 aa)
GAA11118.1Hypothetical protein. (195 aa)
GAA11214.1Putative LSR2-like protein. (114 aa)
GAA11240.1Putative AraC family transcriptional regulator. (287 aa)
GAA11444.1Hypothetical protein. (295 aa)
GAA11469.1Hypothetical protein. (232 aa)
GAA11470.1Hypothetical protein. (176 aa)
GAA11471.1Putative phosphatase. (315 aa)
GAA11472.1Hypothetical protein. (56 aa)
GAA11565.1Putative Usp family protein. (299 aa)
GAA12337.1Hypothetical protein. (502 aa)
GAA12338.1Hypothetical protein. (139 aa)
GAA12361.1Hypothetical protein. (162 aa)
GAA12563.1Hypothetical protein. (148 aa)
whiBPutative WhiB family regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (91 aa)
GAA13022.1Putative Xre family DNA-binding protein. (283 aa)
hupDNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (208 aa)
whiB-2Putative WhiB family regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (166 aa)
GAA13394.1Hypothetical protein. (363 aa)
GAA13395.1Hypothetical protein. (221 aa)
GAA13396.1Hypothetical protein. (326 aa)
GAA13397.1Putative helicase. (693 aa)
GAA13415.1Hypothetical protein. (456 aa)
nucSHypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (227 aa)
GAA13903.1Putative two-component response regulator. (207 aa)
whiB-4Putative WhiB family regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (96 aa)
whiB-5Putative WhiB family regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (84 aa)
GAA14005.1Putative two-component histidine kinase. (509 aa)
GAA14006.1Putative biotinylated protein. (73 aa)
RsrAPutative anti-sigma factor. (95 aa)
sigHRNA polymerase ECF-type sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (277 aa)
YbaKPutative aminoacyl-tRNA deacylase; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (164 aa)
GAA14010.1Hypothetical protein; Belongs to the SOS response-associated peptidase family. (261 aa)
rbpAHypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. (114 aa)
ppm1Polyprenol-phosphate mannosyltransferase. (281 aa)
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (560 aa)
GAA14308.1Hypothetical protein. (536 aa)
GAA14309.1Hypothetical protein. (178 aa)
GAA14322.1Putative helicase. (942 aa)
tatCSec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (324 aa)
tatASec-independent protein translocase protein TatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (87 aa)
pafCProteasome accessory factor C. (322 aa)
pafBProteasome accessory factor B. (330 aa)
pafAProteasome accessory factor A; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. (447 aa)
prcA20S proteasome alpha-type subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. (266 aa)
prcB20S proteasome beta-type subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. (293 aa)
pupProkaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. (63 aa)
pup-2Prokaryotic ubiquitin-like protein Pup. (499 aa)
arcATPase ARC; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. (595 aa)
GAA14335.1Putative tRNA methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. (276 aa)
GAA14336.1Hypothetical protein. (293 aa)
GAA14337.1Hypothetical protein. (286 aa)
GAA14464.1Hypothetical protein. (162 aa)
whiB-6Putative WhiB family regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (98 aa)
GAA14697.1Hypothetical protein. (226 aa)
GAA14698.1Hypothetical protein. (372 aa)
GAA14699.1Hypothetical protein. (219 aa)
GAA14700.1Hypothetical protein. (571 aa)
GAA14801.1Putative methylated-DNA--protein-cysteine methyltransferase. (173 aa)
GAA14839.1Putative MerR family transcriptional regulator. (228 aa)
GAA14840.1Hypothetical protein. (170 aa)
GAA14841.1Putative MerR family transcriptional regulator. (213 aa)
GAA15144.1Putative DNA repair helicase. (730 aa)
Your Current Organism:
Gordonia alkanivorans
NCBI taxonomy Id: 1027371
Other names: G. alkanivorans NBRC 16433, Gordonia alkanivorans CIP 106363, Gordonia alkanivorans DSM 44369, Gordonia alkanivorans NBRC 16433, Gordonia alkanivorans str. NBRC 16433, Gordonia alkanivorans strain NBRC 16433
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