STRINGSTRING
pilD pilD pilC pilC pilB pilB gspE1 gspE1 xcpS xcpS xcpT xcpT pilT pilT gspE3 gspE3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pilDPrepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (299 aa)
pilCType 4 fimbrial assembly protein pilC; High confidence in function and specificity. (407 aa)
pilBType IV-A pilus assembly ATPase PilB; High confidence in function and specificity. (569 aa)
gspE1General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (513 aa)
xcpSGeneral secretion pathway protein F; High confidence in function and specificity. (400 aa)
xcpTGeneral secretion pathway protein G, CoA-transferase family III; High confidence in function and specificity. (190 aa)
pilTTwitching mobility protein, pilus retraction protein; High confidence in function and specificity. (351 aa)
gspE3Putative general secretion pathway protein; Type II secretion system protein E, GSPII_E N-terminal domain; High confidence in function and specificity. (595 aa)
Your Current Organism:
Psychrobacter sp. DABAL43B
NCBI taxonomy Id: 1028416
Other names: P. sp. DAB_AL43B, Psychrobacter sp. DAB_AL43B
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