(48 nodes) ABC transporters network (Psychrobacter sp. DABAL43B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	potC	Spermidine/putrescine ABC transporter membrane protein; Spermidine/putrescine transport system permease protein potC, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (279 aa)
	potB	Binding-protein-dependent transport systems inner membrane component; Hypothetical protein. (292 aa)
	potA	Putrescine/spermidine ABC transporter ATPase protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (424 aa)
	SLJ83593.1	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity. (265 aa)
	SLJ83594.1	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear. (120 aa)
	SLJ83597.1	Extracellular solute-binding protein, family 3; High confidence in function and specificity. (134 aa)
	artI	Extracellular solute-binding protein; Arginine-binding periplasmic protein 1, family 3; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family. (315 aa)
	SLJ83599.1	Extracellular solute-binding protein; Arginine-binding periplasmic protein 2, family 3; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family. (339 aa)
	SLJ83600.1	Amino acid ABC transporter permease; Nopaline transport system permease protein nocQ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (244 aa)
	occM	Amino acid ABC transporter permease; Binding-protein-dependent transport systems inner membrane component; Hypothetical protein. (241 aa)
	gltI	Glutamate/aspartate periplasmic-binding protein; Extracellular solute-binding protein, family 3; High confidence in function and specificity. (331 aa)
	gltJ	Glutamate/aspartate transport system permease protein gltJ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (248 aa)
	gltK	Glutamate/aspartate transport system permease protein gltK, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (223 aa)
	gltL	Glutamate/aspartate transport ATP-binding protein gltL, ABC transporter-like; High confidence in function and specificity. (272 aa)
	tcyA	Probable ABC transporter extracellular-binding protein yckB, family 3; Conserved hypothetical protein. (290 aa)
	SLJ83745.1	Phosphonate-transporting ATPase; Uncharacterized ABC transporter ATP-binding protein yadG, ABC transporter-like, SRP54-type protein, GTPase domain; High confidence in function and specificity. (320 aa)
	SLJ83746.1	ABC transporter permease; Inner membrane transport permease yadH; High confidence in function and specificity. (281 aa)
	dppF	Dipeptide transport ATP-binding protein dppF, ATP-binding; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (323 aa)
	dppD	Dipeptide transport ATP-binding protein dppD, ABC transporter; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (358 aa)
	dppC	Dipeptide transport system permease protein dppC; High confidence in function and specificity. (304 aa)
	dppB	Dipeptide transport system permease protein dppB, probable nickel transporter; High confidence in function and specificity. (342 aa)
	SLJ84115.1	Extracellular solute-binding protein; RPeriplasmic dipeptide transport protein; High confidence in function and specificity. (547 aa)
	SLJ84579.1	Peptide ABC transporter periplasmic solute-binding protein; Bacterial extracellular solute-binding protein, family 5; High confidence in function and specificity. (610 aa)
	SLJ84581.1	Peptide ABC transporter inner membrane protein, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (356 aa)
	SLJ84582.1	Inner membrane ABC transporter permease protein yejE, binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (357 aa)
	oppD	Oligopeptide ABC transporter ATP-binding protein; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (566 aa)
	cysH	Phosphoadenylyl-sulfate reductase (thioredoxin); High confidence in function and specificity. (212 aa)
	SLJ84625.1	Uncharacterized protein conserved in bacteria. (198 aa)
	cysI	Ferredoxin-nitrite reductase, chloroplastic, nitrite/sulphite reductase 4Fe-4S domain; High confidence in function and specificity. (561 aa)
	sat	Sulfate adenylyltransferase, ATP-sulfurylase; High confidence in function and specificity; Belongs to the sulfate adenylyltransferase family. (417 aa)
	sbp1	ABC sulfate/thiosulfate transporter periplasmic solute-binding protein; Thiosulphate-binding protein, bacterial extracellular solute-binding proteins, family 3; High confidence in function and specificity. (381 aa)
	sbp3	Thiosulphate-binding protein, ABC sulfate/thiosulfate transporter periplasmic solute-binding protein; High confidence in function and specificity. (364 aa)
	cysT	ABC sulfate/thiosulfate transporter inner membrane protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (294 aa)
	cysW	Sulfate transport system permease protein cysW; High confidence in function and specificity. (306 aa)
	cysA	Sulfate/thiosulfate import ATP-binding protein cysA; High confidence in function and specificity; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family. (240 aa)
	SLJ85197.1	Putative spermidine/putrescine ABC transporter ATPase subunit; ABC transporter-like, Protein of unknown function, DUF258; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (453 aa)
	SLJ85198.1	Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (558 aa)
	SLJ85199.1	iron(III) transport system substrate-binding protein; Bacterial extracellular solute-binding, family 1; High confidence in function and specificity. (374 aa)
	SLJ85288.1	ABC transporter-like, Rad17 cell cycle checkpoint protein; High confidence in function and specificity. (307 aa)
	SLJ85289.1	Binding-protein-dependent transport systems inner membrane component; Conserved hypothetical protein. (560 aa)
	SLJ85290.1	iron(III) transport system substrate-binding protein; GldJ_short: gliding motility-associated lipoprotein GldJ; Hypothetical protein. (334 aa)
	SLJ85396.1	Polar amino acid transport system ATP-binding protein; ABC transporter-like, MutS domain V; High confidence in function and specificity. (247 aa)
	SLJ85397.1	Amino acid ABC transporter ATP-binding protein; Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (245 aa)
	SLJ85398.1	Amino acid ABC transporter substrate-binding protein; Extracellular solute-binding protein, family 3, YcaO-like family; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family. (278 aa)
	metN	Methionine import ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family. (256 aa)
	metI	Methionine ABC transporter ATPas; Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity. (228 aa)
	metQ	ABC methionine transporter, periplasmic solute binding protein; NLPA lipoprotein; High confidence in function and specificity. (319 aa)
	SLJ85652.1	Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (359 aa)

Your Current Organism:

Psychrobacter sp. DABAL43B

NCBI taxonomy Id: 1028416
Other names: P. sp. DAB_AL43B, Psychrobacter sp. DAB_AL43B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLJ83593.1	SLJ83594.1	DABAL43B_0378	DABAL43B_0379	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	0.869
SLJ83593.1	SLJ83597.1	DABAL43B_0378	DABAL43B_0382	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Extracellular solute-binding protein, family 3; High confidence in function and specificity.	0.551
SLJ83593.1	SLJ83599.1	DABAL43B_0378	DABAL43B_0384	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Extracellular solute-binding protein; Arginine-binding periplasmic protein 2, family 3; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family.	0.966
SLJ83593.1	SLJ83600.1	DABAL43B_0378	DABAL43B_0385	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Amino acid ABC transporter permease; Nopaline transport system permease protein nocQ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.987
SLJ83593.1	SLJ85397.1	DABAL43B_0378	DABAL43B_2212	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Amino acid ABC transporter ATP-binding protein; Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.876
SLJ83593.1	SLJ85398.1	DABAL43B_0378	DABAL43B_2213	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Amino acid ABC transporter substrate-binding protein; Extracellular solute-binding protein, family 3, YcaO-like family; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family.	0.757
SLJ83593.1	artI	DABAL43B_0378	DABAL43B_0383	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Extracellular solute-binding protein; Arginine-binding periplasmic protein 1, family 3; High confidence in function and specificity; Belongs to the bacterial solute-binding protein 3 family.	0.966
SLJ83593.1	gltI	DABAL43B_0378	DABAL43B_0393	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Glutamate/aspartate periplasmic-binding protein; Extracellular solute-binding protein, family 3; High confidence in function and specificity.	0.501
SLJ83593.1	gltJ	DABAL43B_0378	DABAL43B_0394	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Glutamate/aspartate transport system permease protein gltJ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.831
SLJ83593.1	gltK	DABAL43B_0378	DABAL43B_0395	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Glutamate/aspartate transport system permease protein gltK, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.851
SLJ83593.1	occM	DABAL43B_0378	DABAL43B_0386	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Amino acid ABC transporter permease; Binding-protein-dependent transport systems inner membrane component; Hypothetical protein.	0.989
SLJ83593.1	tcyA	DABAL43B_0378	DABAL43B_0446	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	Probable ABC transporter extracellular-binding protein yckB, family 3; Conserved hypothetical protein.	0.818
SLJ83594.1	SLJ83593.1	DABAL43B_0379	DABAL43B_0378	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Amino acid ABC transporter, ATP-binding protein, PAAT family; High confidence in function and specificity.	0.869
SLJ83594.1	SLJ83597.1	DABAL43B_0379	DABAL43B_0382	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Extracellular solute-binding protein, family 3; High confidence in function and specificity.	0.782
SLJ83594.1	SLJ83600.1	DABAL43B_0379	DABAL43B_0385	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Amino acid ABC transporter permease; Nopaline transport system permease protein nocQ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.843
SLJ83594.1	SLJ85396.1	DABAL43B_0379	DABAL43B_2211	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Polar amino acid transport system ATP-binding protein; ABC transporter-like, MutS domain V; High confidence in function and specificity.	0.783
SLJ83594.1	SLJ85397.1	DABAL43B_0379	DABAL43B_2212	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Amino acid ABC transporter ATP-binding protein; Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.856
SLJ83594.1	gltJ	DABAL43B_0379	DABAL43B_0394	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Glutamate/aspartate transport system permease protein gltJ, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.740
SLJ83594.1	gltK	DABAL43B_0379	DABAL43B_0395	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Glutamate/aspartate transport system permease protein gltK, Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.	0.800
SLJ83594.1	gltL	DABAL43B_0379	DABAL43B_0396	Basic amino acid ABC transporter periplasmic binding protein, Extracellular solute-binding protein, family 3; Specificity unclear.	Glutamate/aspartate transport ATP-binding protein gltL, ABC transporter-like; High confidence in function and specificity.	0.759