(13 nodes) Secretion by cell, and ClpA/B, conserved site 1 network (Psychrobacter sp. DABAL43B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLJ84081.1	Uncharacterized protein conserved in bacteria. (326 aa)
	icmF	Type VI secretion system, IcmF; Hypothetical protein. (1356 aa)
	SLJ84084.1	Hypothetical protein. (318 aa)
	SLJ84086.1	Hypothetical protein, predicted type VI secretion system protein ImpJ. (448 aa)
	SLJ84087.1	Type IV / VI secretion system, DotU; Hypothetical protein. (270 aa)
	SLJ84289.1	Component of the type VI protein secretion system. (170 aa)
	SLJ84290.1	Type VI secretion system protein ImpC. (496 aa)
	SLJ84291.1	Type VI secretion system effector, Hcp1 family; Hypothetical protein. (167 aa)
	SLJ84292.1	Type VI secretion system, lysozyme-related; Hypothetical protein. (163 aa)
	SLJ84293.1	Type VI secretion system, VCA0110; Hypothetical protein. (607 aa)
	SLJ84294.1	Component of the type VI protein secretion system; Hypothetical protein. (351 aa)
	clpB3	ATPase, type VI secretion system, ClpV1, IstB-like ATP binding protein; High confidence in function and specificity; Belongs to the ClpA/ClpB family. (974 aa)
	SLJ84296.1	Type VI secretion system-associated, ImpA; Hypothetical protein. (383 aa)

Your Current Organism:

Psychrobacter sp. DABAL43B

NCBI taxonomy Id: 1028416
Other names: P. sp. DAB_AL43B, Psychrobacter sp. DAB_AL43B

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLJ84081.1	SLJ84084.1	DABAL43B_0882	DABAL43B_0885	Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.858
SLJ84081.1	SLJ84086.1	DABAL43B_0882	DABAL43B_0887	Uncharacterized protein conserved in bacteria.	Hypothetical protein, predicted type VI secretion system protein ImpJ.	0.853
SLJ84081.1	SLJ84087.1	DABAL43B_0882	DABAL43B_0888	Uncharacterized protein conserved in bacteria.	Type IV / VI secretion system, DotU; Hypothetical protein.	0.889
SLJ84081.1	SLJ84289.1	DABAL43B_0882	DABAL43B_1091	Uncharacterized protein conserved in bacteria.	Component of the type VI protein secretion system.	0.843
SLJ84081.1	SLJ84290.1	DABAL43B_0882	DABAL43B_1092	Uncharacterized protein conserved in bacteria.	Type VI secretion system protein ImpC.	0.832
SLJ84081.1	SLJ84291.1	DABAL43B_0882	DABAL43B_1093	Uncharacterized protein conserved in bacteria.	Type VI secretion system effector, Hcp1 family; Hypothetical protein.	0.817
SLJ84081.1	SLJ84292.1	DABAL43B_0882	DABAL43B_1094	Uncharacterized protein conserved in bacteria.	Type VI secretion system, lysozyme-related; Hypothetical protein.	0.841
SLJ84081.1	SLJ84293.1	DABAL43B_0882	DABAL43B_1095	Uncharacterized protein conserved in bacteria.	Type VI secretion system, VCA0110; Hypothetical protein.	0.858
SLJ84081.1	SLJ84294.1	DABAL43B_0882	DABAL43B_1096	Uncharacterized protein conserved in bacteria.	Component of the type VI protein secretion system; Hypothetical protein.	0.839
SLJ84081.1	SLJ84296.1	DABAL43B_0882	DABAL43B_1098	Uncharacterized protein conserved in bacteria.	Type VI secretion system-associated, ImpA; Hypothetical protein.	0.806
SLJ84081.1	icmF	DABAL43B_0882	DABAL43B_0883	Uncharacterized protein conserved in bacteria.	Type VI secretion system, IcmF; Hypothetical protein.	0.971
SLJ84084.1	SLJ84081.1	DABAL43B_0885	DABAL43B_0882	Hypothetical protein.	Uncharacterized protein conserved in bacteria.	0.858
SLJ84084.1	SLJ84086.1	DABAL43B_0885	DABAL43B_0887	Hypothetical protein.	Hypothetical protein, predicted type VI secretion system protein ImpJ.	0.938
SLJ84084.1	SLJ84087.1	DABAL43B_0885	DABAL43B_0888	Hypothetical protein.	Type IV / VI secretion system, DotU; Hypothetical protein.	0.907
SLJ84084.1	SLJ84289.1	DABAL43B_0885	DABAL43B_1091	Hypothetical protein.	Component of the type VI protein secretion system.	0.799
SLJ84084.1	SLJ84290.1	DABAL43B_0885	DABAL43B_1092	Hypothetical protein.	Type VI secretion system protein ImpC.	0.780
SLJ84084.1	SLJ84291.1	DABAL43B_0885	DABAL43B_1093	Hypothetical protein.	Type VI secretion system effector, Hcp1 family; Hypothetical protein.	0.788
SLJ84084.1	SLJ84292.1	DABAL43B_0885	DABAL43B_1094	Hypothetical protein.	Type VI secretion system, lysozyme-related; Hypothetical protein.	0.778
SLJ84084.1	SLJ84293.1	DABAL43B_0885	DABAL43B_1095	Hypothetical protein.	Type VI secretion system, VCA0110; Hypothetical protein.	0.754
SLJ84084.1	SLJ84294.1	DABAL43B_0885	DABAL43B_1096	Hypothetical protein.	Component of the type VI protein secretion system; Hypothetical protein.	0.761