(12 nodes) Phenylalanine metabolism network (Psychrobacter sp. DABAL43B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLJ83231.1	enoyl-CoA hydratase; High confidence in function and specificity. (271 aa)
	dadA	D-amino acid dehydrogenase small subunit; High confidence in function and specificity. (439 aa)
	nylA	Amidase; High confidence in function and specificity; Belongs to the amidase family. (497 aa)
	paaG	enoyl-CoA hydratase; Crotonase, core; High confidence in function and specificity; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	SLJ84733.1	Amine oxidase; High confidence in function and specificity. (533 aa)
	hisC1	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (380 aa)
	SLJ84905.1	Amine oxidase, Glucose inhibited division protein A; High confidence in function and specificity. (533 aa)
	SLJ85011.1	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity. (415 aa)
	phhA	Phenylalanine 4-monooxygenase; Aromatic amino acid hydroxylase, C-terminal, Biopterin-dependent aromatic amino acid hydroxylase; High confidence in function and specificity. (284 aa)
	hppD	4-hydroxyphenylpyruvate dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; High confidence in function and specificity. (370 aa)
	tyrB	Aspartate/other aminotransferase, Aminotransferase class I and II; High confidence in function and specificity. (398 aa)
	hisC3	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (377 aa)

Your Current Organism:

Psychrobacter sp. DABAL43B

NCBI taxonomy Id: 1028416
Other names: P. sp. DAB_AL43B, Psychrobacter sp. DAB_AL43B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLJ83231.1	paaG	DABAL43B_0007	DABAL43B_0908	enoyl-CoA hydratase; High confidence in function and specificity.	enoyl-CoA hydratase; Crotonase, core; High confidence in function and specificity; Belongs to the enoyl-CoA hydratase/isomerase family.	0.974
SLJ84733.1	SLJ84905.1	DABAL43B_1538	DABAL43B_1710	Amine oxidase; High confidence in function and specificity.	Amine oxidase, Glucose inhibited division protein A; High confidence in function and specificity.	0.900
SLJ84905.1	SLJ84733.1	DABAL43B_1710	DABAL43B_1538	Amine oxidase, Glucose inhibited division protein A; High confidence in function and specificity.	Amine oxidase; High confidence in function and specificity.	0.900
SLJ85011.1	dadA	DABAL43B_1816	DABAL43B_0192	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	0.927
SLJ85011.1	hisC1	DABAL43B_1816	DABAL43B_1619	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.900
SLJ85011.1	hisC3	DABAL43B_1816	DABAL43B_2498	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.900
SLJ85011.1	hppD	DABAL43B_1816	DABAL43B_1838	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	4-hydroxyphenylpyruvate dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; High confidence in function and specificity.	0.910
SLJ85011.1	tyrB	DABAL43B_1816	DABAL43B_1840	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	Aspartate/other aminotransferase, Aminotransferase class I and II; High confidence in function and specificity.	0.913
dadA	SLJ85011.1	DABAL43B_0192	DABAL43B_1816	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	0.927
dadA	hisC1	DABAL43B_0192	DABAL43B_1619	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.900
dadA	hisC3	DABAL43B_0192	DABAL43B_2498	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.900
dadA	hppD	DABAL43B_0192	DABAL43B_1838	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	4-hydroxyphenylpyruvate dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; High confidence in function and specificity.	0.910
dadA	tyrB	DABAL43B_0192	DABAL43B_1840	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	Aspartate/other aminotransferase, Aminotransferase class I and II; High confidence in function and specificity.	0.911
hisC1	SLJ85011.1	DABAL43B_1619	DABAL43B_1816	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	0.900
hisC1	dadA	DABAL43B_1619	DABAL43B_0192	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	D-amino acid dehydrogenase small subunit; High confidence in function and specificity.	0.900
hisC1	hisC3	DABAL43B_1619	DABAL43B_2498	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.911
hisC1	hppD	DABAL43B_1619	DABAL43B_1838	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	4-hydroxyphenylpyruvate dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; High confidence in function and specificity.	0.927
hisC1	phhA	DABAL43B_1619	DABAL43B_1837	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Phenylalanine 4-monooxygenase; Aromatic amino acid hydroxylase, C-terminal, Biopterin-dependent aromatic amino acid hydroxylase; High confidence in function and specificity.	0.906
hisC1	tyrB	DABAL43B_1619	DABAL43B_1840	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Aspartate/other aminotransferase, Aminotransferase class I and II; High confidence in function and specificity.	0.912
hisC3	SLJ85011.1	DABAL43B_2498	DABAL43B_1816	Histidinol-phosphate aminotransferase, Aminotransferase class I and II; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	D-amino-acid dehydrogenase; FAD dependent oxidoreductase, HI0933-like protein; High confidence in function and specificity.	0.900