(33 nodes) Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily network (Sphingomonas sp. KC8)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KC8_16650	Unannotated protein. (397 aa)
	KC8_19500	Unannotated protein. (367 aa)
	KC8_19580	Unannotated protein. (387 aa)
	KC8_11445	Unannotated protein. (380 aa)
	KC8_01915	Unannotated protein. (394 aa)
	KC8_08280	Unannotated protein. (388 aa)
	KC8_03535	Unannotated protein. (380 aa)
	KC8_03525	Unannotated protein. (387 aa)
	KC8_06500	Unannotated protein. (409 aa)
	KC8_06350	Unannotated protein. (387 aa)
	KC8_06300	Unannotated protein. (385 aa)
	KC8_05945	Unannotated protein. (387 aa)
	KC8_19650	Unannotated protein. (402 aa)
	KC8_19675	Unannotated protein. (366 aa)
	KC8_04750	Unannotated protein. (388 aa)
	KC8_04745	Unannotated protein. (378 aa)
	KC8_04410	Unannotated protein. (391 aa)
	KC8_04400	Unannotated protein. (379 aa)
	KC8_14975	Unannotated protein. (392 aa)
	KC8_14980	Unannotated protein. (375 aa)
	KC8_02665	Unannotated protein. (571 aa)
	KC8_02235	Unannotated protein. (169 aa)
	KC8_05310	Unannotated protein. (395 aa)
	KC8_05380	Unannotated protein. (381 aa)
	KC8_12845	Unannotated protein. (412 aa)
	KC8_01055	Unannotated protein. (383 aa)
	KC8_01050	Unannotated protein. (333 aa)
	KC8_01030	Unannotated protein. (380 aa)
	KC8_00485	Unannotated protein. (597 aa)
	KC8_09390	Unannotated protein. (394 aa)
	KC8_09475	Unannotated protein. (382 aa)
	KC8_02240	Unannotated protein. (360 aa)
	KC8_03565	Unannotated protein. (402 aa)

Your Current Organism:

Sphingomonas sp. KC8

NCBI taxonomy Id: 1030157
Other names: S. sp. KC8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KC8_01030	KC8_01050	GCA_000214335_02294	GCA_000214335_02298	Unannotated protein.	Unannotated protein.	0.817
KC8_01030	KC8_01055	GCA_000214335_02294	GCA_000214335_02299	Unannotated protein.	Unannotated protein.	0.954
KC8_01030	KC8_03525	GCA_000214335_02294	GCA_000214335_02366	Unannotated protein.	Unannotated protein.	0.569
KC8_01030	KC8_04410	GCA_000214335_02294	GCA_000214335_02913	Unannotated protein.	Unannotated protein.	0.816
KC8_01030	KC8_04750	GCA_000214335_02294	GCA_000214335_02845	Unannotated protein.	Unannotated protein.	0.850
KC8_01030	KC8_05310	GCA_000214335_02294	GCA_000214335_03522	Unannotated protein.	Unannotated protein.	0.809
KC8_01030	KC8_12845	GCA_000214335_02294	GCA_000214335_03782	Unannotated protein.	Unannotated protein.	0.430
KC8_01030	KC8_14975	GCA_000214335_02294	GCA_000214335_03156	Unannotated protein.	Unannotated protein.	0.880
KC8_01050	KC8_01030	GCA_000214335_02298	GCA_000214335_02294	Unannotated protein.	Unannotated protein.	0.817
KC8_01050	KC8_01055	GCA_000214335_02298	GCA_000214335_02299	Unannotated protein.	Unannotated protein.	0.964
KC8_01050	KC8_02240	GCA_000214335_02298	GCA_000214335_01951	Unannotated protein.	Unannotated protein.	0.739
KC8_01050	KC8_03525	GCA_000214335_02298	GCA_000214335_02366	Unannotated protein.	Unannotated protein.	0.809
KC8_01050	KC8_03535	GCA_000214335_02298	GCA_000214335_02364	Unannotated protein.	Unannotated protein.	0.723
KC8_01050	KC8_03565	GCA_000214335_02298	GCA_000214335_01949	Unannotated protein.	Unannotated protein.	0.434
KC8_01050	KC8_04410	GCA_000214335_02298	GCA_000214335_02913	Unannotated protein.	Unannotated protein.	0.789
KC8_01050	KC8_04750	GCA_000214335_02298	GCA_000214335_02845	Unannotated protein.	Unannotated protein.	0.880
KC8_01050	KC8_05310	GCA_000214335_02298	GCA_000214335_03522	Unannotated protein.	Unannotated protein.	0.787
KC8_01050	KC8_08280	GCA_000214335_02298	GCA_000214335_00384	Unannotated protein.	Unannotated protein.	0.578
KC8_01050	KC8_14975	GCA_000214335_02298	GCA_000214335_03156	Unannotated protein.	Unannotated protein.	0.904
KC8_01050	KC8_16650	GCA_000214335_02298	GCA_000214335_01690	Unannotated protein.	Unannotated protein.	0.453