(28 nodes) Vicinal oxygen chelate (VOC) domain network (Sphingomonas sp. KC8)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KC8_19655	Unannotated protein. (303 aa)
	KC8_04250	Unannotated protein. (140 aa)
	KC8_11515	Unannotated protein. (181 aa)
	KC8_11555	Unannotated protein. (146 aa)
	KC8_19850	Unannotated protein. (126 aa)
	KC8_16655	Unannotated protein. (307 aa)
	KC8_02290	Unannotated protein. (140 aa)
	KC8_09595	Unannotated protein. (127 aa)
	KC8_09205	Unannotated protein. (150 aa)
	KC8_00920	Unannotated protein. (133 aa)
	KC8_01090	Unannotated protein. (301 aa)
	KC8_01155	Unannotated protein. (153 aa)
	KC8_08375	Unannotated protein. (162 aa)
	KC8_06365	Unannotated protein. (174 aa)
	KC8_06335	Unannotated protein. (318 aa)
	KC8_05905	Unannotated protein. (167 aa)
	KC8_14110	Unannotated protein. (151 aa)
	KC8_14865	Unannotated protein. (137 aa)
	KC8_16190	Unannotated protein. (129 aa)
	KC8_12075	Unannotated protein. (293 aa)
	KC8_03040	Unannotated protein. (357 aa)
	KC8_02330	Unannotated protein. (137 aa)
	KC8_05245	Unannotated protein. (175 aa)
	KC8_05295	Unannotated protein. (144 aa)
	KC8_05320	Unannotated protein. (137 aa)
	KC8_05325	Unannotated protein. (309 aa)
	KC8_12865	Unannotated protein. (120 aa)
	KC8_12170	Unannotated protein. (259 aa)

Your Current Organism:

Sphingomonas sp. KC8

NCBI taxonomy Id: 1030157
Other names: S. sp. KC8

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KC8_01155	KC8_02330	GCA_000214335_02319	GCA_000214335_03486	Unannotated protein.	Unannotated protein.	0.900
KC8_01155	KC8_05320	GCA_000214335_02319	GCA_000214335_03524	Unannotated protein.	Unannotated protein.	0.900
KC8_01155	KC8_12075	GCA_000214335_02319	GCA_000214335_03306	Unannotated protein.	Unannotated protein.	0.504
KC8_01155	KC8_14865	GCA_000214335_02319	GCA_000214335_03134	Unannotated protein.	Unannotated protein.	0.900
KC8_02330	KC8_01155	GCA_000214335_03486	GCA_000214335_02319	Unannotated protein.	Unannotated protein.	0.900
KC8_02330	KC8_05320	GCA_000214335_03486	GCA_000214335_03524	Unannotated protein.	Unannotated protein.	0.900
KC8_02330	KC8_14865	GCA_000214335_03486	GCA_000214335_03134	Unannotated protein.	Unannotated protein.	0.900
KC8_05245	KC8_05295	GCA_000214335_03509	GCA_000214335_03519	Unannotated protein.	Unannotated protein.	0.900
KC8_05245	KC8_06365	GCA_000214335_03509	GCA_000214335_02536	Unannotated protein.	Unannotated protein.	0.900
KC8_05245	KC8_14110	GCA_000214335_03509	GCA_000214335_02983	Unannotated protein.	Unannotated protein.	0.900
KC8_05295	KC8_05245	GCA_000214335_03519	GCA_000214335_03509	Unannotated protein.	Unannotated protein.	0.900
KC8_05295	KC8_06365	GCA_000214335_03519	GCA_000214335_02536	Unannotated protein.	Unannotated protein.	0.900
KC8_05295	KC8_14110	GCA_000214335_03519	GCA_000214335_02983	Unannotated protein.	Unannotated protein.	0.900
KC8_05320	KC8_01155	GCA_000214335_03524	GCA_000214335_02319	Unannotated protein.	Unannotated protein.	0.900
KC8_05320	KC8_02330	GCA_000214335_03524	GCA_000214335_03486	Unannotated protein.	Unannotated protein.	0.900
KC8_05320	KC8_05325	GCA_000214335_03524	GCA_000214335_03525	Unannotated protein.	Unannotated protein.	0.762
KC8_05320	KC8_14865	GCA_000214335_03524	GCA_000214335_03134	Unannotated protein.	Unannotated protein.	0.900
KC8_05325	KC8_05320	GCA_000214335_03525	GCA_000214335_03524	Unannotated protein.	Unannotated protein.	0.762
KC8_05325	KC8_06335	GCA_000214335_03525	GCA_000214335_02542	Unannotated protein.	Unannotated protein.	0.475
KC8_05325	KC8_11515	GCA_000214335_03525	GCA_000214335_01550	Unannotated protein.	Unannotated protein.	0.459