(38 nodes) Serine family amino acid metabolic process, and Threonine metabolic process network (Streptomyces sp. Wb2n11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001049855_01446	Unannotated protein. (305 aa)
	GCA_001049855_01844	Unannotated protein. (530 aa)
	GCA_001049855_01864	Unannotated protein. (293 aa)
	GCA_001049855_01885	Unannotated protein. (371 aa)
	GCA_001049855_01886	Unannotated protein. (126 aa)
	GCA_001049855_01887	Unannotated protein. (420 aa)
	GCA_001049855_01888	Unannotated protein. (455 aa)
	GCA_001049855_02029	Unannotated protein. (422 aa)
	GCA_001049855_02038	Unannotated protein. (306 aa)
	GCA_001049855_02039	Unannotated protein. (356 aa)
	GCA_001049855_02040	Unannotated protein. (439 aa)
	GCA_001049855_02416	Unannotated protein. (409 aa)
	GCA_001049855_02421	Unannotated protein. (381 aa)
	GCA_001049855_02555	Unannotated protein. (291 aa)
	GCA_001049855_03332	Unannotated protein. (188 aa)
	GCA_001049855_03341	Unannotated protein. (203 aa)
	GCA_001049855_03345	Unannotated protein. (379 aa)
	GCA_001049855_03636	Unannotated protein. (442 aa)
	GCA_001049855_03710	Unannotated protein. (363 aa)
	GCA_001049855_03735	Unannotated protein. (300 aa)
	GCA_001049855_03934	Unannotated protein. (464 aa)
	GCA_001049855_04239	Unannotated protein. (413 aa)
	GCA_001049855_04818	Unannotated protein. (290 aa)
	GCA_001049855_05043	Unannotated protein. (368 aa)
	GCA_001049855_05100	Unannotated protein. (405 aa)
	GCA_001049855_05228	Unannotated protein. (318 aa)
	GCA_001049855_05281	Unannotated protein. (1171 aa)
	GCA_001049855_05442	Unannotated protein. (327 aa)
	GCA_001049855_05693	Unannotated protein. (961 aa)
	GCA_001049855_05760	Unannotated protein. (411 aa)
	GCA_001049855_06215	Unannotated protein. (377 aa)
	GCA_001049855_06234	Unannotated protein. (344 aa)
	GCA_001049855_06340	Unannotated protein. (470 aa)
	GCA_001049855_07581	Unannotated protein. (320 aa)
	GCA_001049855_07582	Unannotated protein. (244 aa)
	GCA_001049855_07594	Unannotated protein. (318 aa)
	GCA_001049855_07647	Unannotated protein. (89 aa)
	GCA_001049855_07702	Unannotated protein. (349 aa)

Your Current Organism:

Streptomyces sp. Wb2n11

NCBI taxonomy Id: 1030533
Other names: S. sp. Wb2n-11, Streptomyces sp. Wb2n-11

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001049855_01446	GCA_001049855_01864	Unannotated protein.	Unannotated protein.	0.654
GCA_001049855_01446	GCA_001049855_02038	Unannotated protein.	Unannotated protein.	0.898
GCA_001049855_01446	GCA_001049855_02040	Unannotated protein.	Unannotated protein.	0.913
GCA_001049855_01446	GCA_001049855_02416	Unannotated protein.	Unannotated protein.	0.898
GCA_001049855_01446	GCA_001049855_02421	Unannotated protein.	Unannotated protein.	0.935
GCA_001049855_01446	GCA_001049855_03345	Unannotated protein.	Unannotated protein.	0.931
GCA_001049855_01446	GCA_001049855_03934	Unannotated protein.	Unannotated protein.	0.905
GCA_001049855_01446	GCA_001049855_04818	Unannotated protein.	Unannotated protein.	0.542
GCA_001049855_01446	GCA_001049855_05281	Unannotated protein.	Unannotated protein.	0.946
GCA_001049855_01446	GCA_001049855_05442	Unannotated protein.	Unannotated protein.	0.418
GCA_001049855_01446	GCA_001049855_05760	Unannotated protein.	Unannotated protein.	0.937
GCA_001049855_01446	GCA_001049855_06215	Unannotated protein.	Unannotated protein.	0.917
GCA_001049855_01446	GCA_001049855_06234	Unannotated protein.	Unannotated protein.	0.839
GCA_001049855_01446	GCA_001049855_07581	Unannotated protein.	Unannotated protein.	0.793
GCA_001049855_01446	GCA_001049855_07594	Unannotated protein.	Unannotated protein.	0.793
GCA_001049855_01446	GCA_001049855_07702	Unannotated protein.	Unannotated protein.	0.656
GCA_001049855_01844	GCA_001049855_01885	Unannotated protein.	Unannotated protein.	0.800
GCA_001049855_01844	GCA_001049855_01886	Unannotated protein.	Unannotated protein.	0.767
GCA_001049855_01844	GCA_001049855_01887	Unannotated protein.	Unannotated protein.	0.923
GCA_001049855_01844	GCA_001049855_02029	Unannotated protein.	Unannotated protein.	0.923