(106 nodes) Vitamin binding network (Streptomyces sp. Wb2n11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001049855_06847	Unannotated protein. (371 aa)
	GCA_001049855_06932	Unannotated protein. (403 aa)
	GCA_001049855_06970	Unannotated protein. (3820 aa)
	GCA_001049855_06977	Unannotated protein. (525 aa)
	GCA_001049855_07261	Unannotated protein. (732 aa)
	GCA_001049855_07262	Unannotated protein. (4459 aa)
	GCA_001049855_07702	Unannotated protein. (349 aa)
	GCA_001049855_05281	Unannotated protein. (1171 aa)
	GCA_001049855_05446	Unannotated protein. (400 aa)
	GCA_001049855_05499	Unannotated protein. (399 aa)
	GCA_001049855_05650	Unannotated protein. (499 aa)
	GCA_001049855_05693	Unannotated protein. (961 aa)
	GCA_001049855_05760	Unannotated protein. (411 aa)
	GCA_001049855_05777	Unannotated protein. (431 aa)
	GCA_001049855_05780	Unannotated protein. (385 aa)
	GCA_001049855_05953	Unannotated protein. (3475 aa)
	GCA_001049855_06097	Unannotated protein. (586 aa)
	GCA_001049855_06220	Unannotated protein. (278 aa)
	GCA_001049855_06306	Unannotated protein. (4268 aa)
	GCA_001049855_05046	Unannotated protein. (352 aa)
	GCA_001049855_06309	Unannotated protein. (1061 aa)
	GCA_001049855_06340	Unannotated protein. (470 aa)
	GCA_001049855_05041	Unannotated protein. (422 aa)
	GCA_001049855_04999	Unannotated protein. (418 aa)
	GCA_001049855_04913	Unannotated protein. (470 aa)
	GCA_001049855_04872	Unannotated protein. (374 aa)
	GCA_001049855_04844	Unannotated protein. (239 aa)
	GCA_001049855_04764	Unannotated protein. (223 aa)
	GCA_001049855_04470	Unannotated protein. (392 aa)
	GCA_001049855_04239	Unannotated protein. (413 aa)
	GCA_001049855_04234	Unannotated protein. (625 aa)
	GCA_001049855_04202	Unannotated protein. (560 aa)
	GCA_001049855_04187	Unannotated protein. (484 aa)
	GCA_001049855_04130	Unannotated protein. (495 aa)
	GCA_001049855_03946	Unannotated protein. (446 aa)
	GCA_001049855_03751	Unannotated protein. (493 aa)
	GCA_001049855_03750	Unannotated protein. (2013 aa)
	GCA_001049855_03710	Unannotated protein. (363 aa)
	GCA_001049855_03636	Unannotated protein. (442 aa)
	GCA_001049855_03357	Unannotated protein. (364 aa)
	GCA_001049855_03345	Unannotated protein. (379 aa)
	GCA_001049855_03323	Unannotated protein. (343 aa)
	GCA_001049855_03119	Unannotated protein. (403 aa)
	GCA_001049855_03105	Unannotated protein. (419 aa)
	GCA_001049855_03090	Unannotated protein. (440 aa)
	GCA_001049855_03003	Unannotated protein. (434 aa)
	GCA_001049855_02826	Unannotated protein. (438 aa)
	GCA_001049855_02753	Unannotated protein. (359 aa)
	GCA_001049855_02718	Unannotated protein. (408 aa)
	GCA_001049855_02640	Unannotated protein. (383 aa)
	GCA_001049855_02582	Unannotated protein. (223 aa)
	GCA_001049855_02572	Unannotated protein. (137 aa)
	GCA_001049855_02540	Unannotated protein. (403 aa)
	GCA_001049855_02539	Unannotated protein. (423 aa)
	GCA_001049855_02529	Unannotated protein. (47 aa)
	GCA_001049855_02508	Unannotated protein. (526 aa)
	GCA_001049855_02421	Unannotated protein. (381 aa)
	GCA_001049855_02416	Unannotated protein. (409 aa)
	GCA_001049855_02398	Unannotated protein. (403 aa)
	GCA_001049855_02099	Unannotated protein. (1282 aa)
	GCA_001049855_02257	Unannotated protein. (366 aa)
	GCA_001049855_02041	Unannotated protein. (463 aa)
	GCA_001049855_02039	Unannotated protein. (356 aa)
	GCA_001049855_02029	Unannotated protein. (422 aa)
	GCA_001049855_01980	Unannotated protein. (566 aa)
	GCA_001049855_01956	Unannotated protein. (877 aa)
	GCA_001049855_01887	Unannotated protein. (420 aa)
	GCA_001049855_01870	Unannotated protein. (389 aa)
	GCA_001049855_01847	Unannotated protein. (619 aa)
	GCA_001049855_01738	Unannotated protein. (367 aa)
	GCA_001049855_01731	Unannotated protein. (459 aa)
	GCA_001049855_01716	Unannotated protein. (444 aa)
	GCA_001049855_01591	Unannotated protein. (459 aa)
	GCA_001049855_01583	Unannotated protein. (964 aa)
	GCA_001049855_01502	Unannotated protein. (1299 aa)
	GCA_001049855_01497	Unannotated protein. (588 aa)
	GCA_001049855_01346	Unannotated protein. (637 aa)
	GCA_001049855_01262	Unannotated protein. (393 aa)
	GCA_001049855_01185	Unannotated protein. (591 aa)
	GCA_001049855_01117	Unannotated protein. (431 aa)
	GCA_001049855_00964	Unannotated protein. (597 aa)
	GCA_001049855_00960	Unannotated protein. (405 aa)
	GCA_001049855_00908	Unannotated protein. (560 aa)
	GCA_001049855_00758	Unannotated protein. (465 aa)
	GCA_001049855_00672	Unannotated protein. (392 aa)
	GCA_001049855_00508	Unannotated protein. (180 aa)
	GCA_001049855_00401	Unannotated protein. (109 aa)
	GCA_001049855_00107	Unannotated protein. (428 aa)
	GCA_001049855_00075	Unannotated protein. (2456 aa)
	GCA_001049855_00044	Unannotated protein. (2244 aa)
	GCA_001049855_00019	Unannotated protein. (9487 aa)
	GCA_001049855_00018	Unannotated protein. (281 aa)
	GCA_001049855_00017	Unannotated protein. (1021 aa)
	GCA_001049855_00016	Unannotated protein. (250 aa)
	GCA_001049855_00015	Unannotated protein. (174 aa)
	GCA_001049855_00014	Unannotated protein. (3629 aa)
	GCA_001049855_00013	Unannotated protein. (2053 aa)
	GCA_001049855_00007	Unannotated protein. (1374 aa)
	GCA_001049855_00005	Unannotated protein. (3779 aa)
	GCA_001049855_00003	Unannotated protein. (81 aa)
	GCA_001049855_00002	Unannotated protein. (339 aa)
	GCA_001049855_06341	Unannotated protein. (762 aa)
	GCA_001049855_06564	Unannotated protein. (541 aa)
	GCA_001049855_06753	Unannotated protein. (143 aa)
	GCA_001049855_06813	Unannotated protein. (2796 aa)
	GCA_001049855_06836	Unannotated protein. (81 aa)

Your Current Organism:

Streptomyces sp. Wb2n11

NCBI taxonomy Id: 1030533
Other names: S. sp. Wb2n-11, Streptomyces sp. Wb2n-11

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001049855_00002	GCA_001049855_00003	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00005	Unannotated protein.	Unannotated protein.	0.997
GCA_001049855_00002	GCA_001049855_00007	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00013	Unannotated protein.	Unannotated protein.	0.995
GCA_001049855_00002	GCA_001049855_00014	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00015	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00016	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00017	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00018	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00019	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00044	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00075	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_00002	GCA_001049855_00107	Unannotated protein.	Unannotated protein.	0.406
GCA_001049855_00002	GCA_001049855_00401	Unannotated protein.	Unannotated protein.	0.826
GCA_001049855_00002	GCA_001049855_00672	Unannotated protein.	Unannotated protein.	0.851
GCA_001049855_00002	GCA_001049855_00960	Unannotated protein.	Unannotated protein.	0.411
GCA_001049855_00002	GCA_001049855_01117	Unannotated protein.	Unannotated protein.	0.406
GCA_001049855_00002	GCA_001049855_01262	Unannotated protein.	Unannotated protein.	0.851
GCA_001049855_00002	GCA_001049855_01502	Unannotated protein.	Unannotated protein.	0.875
GCA_001049855_00002	GCA_001049855_01591	Unannotated protein.	Unannotated protein.	0.406