(28 nodes) Selenocompound metabolism network (Streptomyces sp. Wb2n11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001049855_01963	Unannotated protein. (111 aa)
	GCA_001049855_06543	Unannotated protein. (124 aa)
	GCA_001049855_06435	Unannotated protein. (126 aa)
	GCA_001049855_06352	Unannotated protein. (312 aa)
	GCA_001049855_06351	Unannotated protein. (418 aa)
	GCA_001049855_06191	Unannotated protein. (108 aa)
	GCA_001049855_06149	Unannotated protein. (317 aa)
	GCA_001049855_06104	Unannotated protein. (312 aa)
	GCA_001049855_05760	Unannotated protein. (411 aa)
	GCA_001049855_05446	Unannotated protein. (400 aa)
	GCA_001049855_05422	Unannotated protein. (759 aa)
	GCA_001049855_05281	Unannotated protein. (1171 aa)
	GCA_001049855_04999	Unannotated protein. (418 aa)
	GCA_001049855_04776	Unannotated protein. (453 aa)
	GCA_001049855_04470	Unannotated protein. (392 aa)
	GCA_001049855_03345	Unannotated protein. (379 aa)
	GCA_001049855_03311	Unannotated protein. (324 aa)
	GCA_001049855_03310	Unannotated protein. (115 aa)
	GCA_001049855_03214	Unannotated protein. (606 aa)
	GCA_001049855_03202	Unannotated protein. (535 aa)
	GCA_001049855_02823	Unannotated protein. (207 aa)
	GCA_001049855_02421	Unannotated protein. (381 aa)
	GCA_001049855_01978	Unannotated protein. (326 aa)
	GCA_001049855_01864	Unannotated protein. (293 aa)
	GCA_001049855_01277	Unannotated protein. (445 aa)
	GCA_001049855_01276	Unannotated protein. (312 aa)
	GCA_001049855_00581	Unannotated protein. (128 aa)
	GCA_001049855_00086	Unannotated protein. (112 aa)

Your Current Organism:

Streptomyces sp. Wb2n11

NCBI taxonomy Id: 1030533
Other names: S. sp. Wb2n-11, Streptomyces sp. Wb2n-11

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001049855_00086	GCA_001049855_03311	Unannotated protein.	Unannotated protein.	0.905
GCA_001049855_00086	GCA_001049855_05281	Unannotated protein.	Unannotated protein.	0.679
GCA_001049855_00086	GCA_001049855_06104	Unannotated protein.	Unannotated protein.	0.803
GCA_001049855_00086	GCA_001049855_06149	Unannotated protein.	Unannotated protein.	0.830
GCA_001049855_00086	GCA_001049855_06435	Unannotated protein.	Unannotated protein.	0.830
GCA_001049855_00581	GCA_001049855_03311	Unannotated protein.	Unannotated protein.	0.984
GCA_001049855_00581	GCA_001049855_05281	Unannotated protein.	Unannotated protein.	0.679
GCA_001049855_00581	GCA_001049855_06104	Unannotated protein.	Unannotated protein.	0.803
GCA_001049855_00581	GCA_001049855_06149	Unannotated protein.	Unannotated protein.	0.941
GCA_001049855_00581	GCA_001049855_06191	Unannotated protein.	Unannotated protein.	0.500
GCA_001049855_00581	GCA_001049855_06435	Unannotated protein.	Unannotated protein.	0.941
GCA_001049855_01276	GCA_001049855_01277	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_01276	GCA_001049855_06351	Unannotated protein.	Unannotated protein.	0.997
GCA_001049855_01277	GCA_001049855_01276	Unannotated protein.	Unannotated protein.	0.999
GCA_001049855_01277	GCA_001049855_06352	Unannotated protein.	Unannotated protein.	0.997
GCA_001049855_01864	GCA_001049855_02421	Unannotated protein.	Unannotated protein.	0.883
GCA_001049855_01864	GCA_001049855_03202	Unannotated protein.	Unannotated protein.	0.461
GCA_001049855_01864	GCA_001049855_03345	Unannotated protein.	Unannotated protein.	0.883
GCA_001049855_01864	GCA_001049855_04470	Unannotated protein.	Unannotated protein.	0.584
GCA_001049855_01864	GCA_001049855_05281	Unannotated protein.	Unannotated protein.	0.980