(43 nodes) Sulfur metabolism network (Streptomyces sp. Wb2n11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001049855_01277	Unannotated protein. (445 aa)
	GCA_001049855_01276	Unannotated protein. (312 aa)
	GCA_001049855_04429	Unannotated protein. (214 aa)
	GCA_001049855_04125	Unannotated protein. (173 aa)
	GCA_001049855_03602	Unannotated protein. (574 aa)
	GCA_001049855_00405	Unannotated protein. (89 aa)
	GCA_001049855_00408	Unannotated protein. (525 aa)
	GCA_001049855_00650	Unannotated protein. (175 aa)
	GCA_001049855_01017	Unannotated protein. (194 aa)
	GCA_001049855_01271	Unannotated protein. (189 aa)
	GCA_001049855_01272	Unannotated protein. (565 aa)
	GCA_001049855_01274	Unannotated protein. (231 aa)
	GCA_001049855_01275	Unannotated protein. (187 aa)
	GCA_001049855_06307	Unannotated protein. (316 aa)
	GCA_001049855_06215	Unannotated protein. (377 aa)
	GCA_001049855_06143	Unannotated protein. (183 aa)
	GCA_001049855_05941	Unannotated protein. (527 aa)
	GCA_001049855_05750	Unannotated protein. (184 aa)
	GCA_001049855_05146	Unannotated protein. (208 aa)
	GCA_001049855_04940	Unannotated protein. (161 aa)
	GCA_001049855_04807	Unannotated protein. (210 aa)
	GCA_001049855_04714	Unannotated protein. (499 aa)
	GCA_001049855_04456	Unannotated protein. (215 aa)
	GCA_001049855_03182	Unannotated protein. (204 aa)
	GCA_001049855_03550	Unannotated protein. (279 aa)
	GCA_001049855_06351	Unannotated protein. (418 aa)
	GCA_001049855_06352	Unannotated protein. (312 aa)
	GCA_001049855_06353	Unannotated protein. (172 aa)
	GCA_001049855_06399	Unannotated protein. (144 aa)
	GCA_001049855_06487	Unannotated protein. (136 aa)
	GCA_001049855_07096	Unannotated protein. (264 aa)
	GCA_001049855_07581	Unannotated protein. (320 aa)
	GCA_001049855_07582	Unannotated protein. (244 aa)
	GCA_001049855_07589	Unannotated protein. (376 aa)
	GCA_001049855_07594	Unannotated protein. (318 aa)
	GCA_001049855_07596	Unannotated protein. (173 aa)
	GCA_001049855_02593	Unannotated protein. (177 aa)
	GCA_001049855_02421	Unannotated protein. (381 aa)
	GCA_001049855_00722	Unannotated protein. (269 aa)
	GCA_001049855_02161	Unannotated protein. (199 aa)
	GCA_001049855_01530	Unannotated protein. (278 aa)
	GCA_001049855_01281	Unannotated protein. (300 aa)
	GCA_001049855_01280	Unannotated protein. (264 aa)

Your Current Organism:

Streptomyces sp. Wb2n11

NCBI taxonomy Id: 1030533
Other names: S. sp. Wb2n-11, Streptomyces sp. Wb2n-11

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001049855_00408	GCA_001049855_01272	Unannotated protein.	Unannotated protein.	0.830
GCA_001049855_00408	GCA_001049855_01274	Unannotated protein.	Unannotated protein.	0.803
GCA_001049855_00408	GCA_001049855_01276	Unannotated protein.	Unannotated protein.	0.669
GCA_001049855_00408	GCA_001049855_01530	Unannotated protein.	Unannotated protein.	0.821
GCA_001049855_00408	GCA_001049855_02593	Unannotated protein.	Unannotated protein.	0.802
GCA_001049855_00408	GCA_001049855_03550	Unannotated protein.	Unannotated protein.	0.838
GCA_001049855_00408	GCA_001049855_03602	Unannotated protein.	Unannotated protein.	0.600
GCA_001049855_00408	GCA_001049855_04807	Unannotated protein.	Unannotated protein.	0.518
GCA_001049855_00408	GCA_001049855_06352	Unannotated protein.	Unannotated protein.	0.669
GCA_001049855_00722	GCA_001049855_01281	Unannotated protein.	Unannotated protein.	0.960
GCA_001049855_00722	GCA_001049855_03182	Unannotated protein.	Unannotated protein.	0.695
GCA_001049855_00722	GCA_001049855_06307	Unannotated protein.	Unannotated protein.	0.436
GCA_001049855_00722	GCA_001049855_07589	Unannotated protein.	Unannotated protein.	0.662
GCA_001049855_00722	GCA_001049855_07596	Unannotated protein.	Unannotated protein.	0.743
GCA_001049855_01271	GCA_001049855_01272	Unannotated protein.	Unannotated protein.	0.843
GCA_001049855_01271	GCA_001049855_01274	Unannotated protein.	Unannotated protein.	0.790
GCA_001049855_01271	GCA_001049855_01275	Unannotated protein.	Unannotated protein.	0.576
GCA_001049855_01271	GCA_001049855_01276	Unannotated protein.	Unannotated protein.	0.609
GCA_001049855_01271	GCA_001049855_01277	Unannotated protein.	Unannotated protein.	0.509
GCA_001049855_01271	GCA_001049855_01280	Unannotated protein.	Unannotated protein.	0.653