STRINGSTRING
CCB68330.1 CCB68330.1 lysC lysC dapF dapF ansA ansA pruA pruA aspC1 aspC1 ilvA ilvA ilvH ilvH ilvB ilvB ilvD ilvD CCB68992.1 CCB68992.1 aroC aroC argD argD CCB69033.1 CCB69033.1 metZ metZ thrA2 thrA2 metX metX metY metY asnB2 asnB2 hisH2 hisH2 hisF2 hisF2 dapB dapB aroQ aroQ sdaA sdaA CCB69265.1 CCB69265.1 asd asd aspC4 aspC4 ilvC ilvC glnA glnA asnB1 asnB1 pabB pabB serA serA serC serC rocD rocD CCB69564.1 CCB69564.1 dapD dapD aroB aroB hisIE hisIE hisF1 hisF1 hisA hisA hisH1 hisH1 hisB hisB hisC hisC hisD hisD hisG hisG CCB69763.1 CCB69763.1 CCB69770.1 CCB69770.1 ggt2 ggt2 pepA pepA thrA1 thrA1 thrB thrB thrC thrC putA putA dapA dapA trpE trpE pabA pabA trpD trpD trpC trpC trpF trpF trpB trpB trpA trpA aspC2 aspC2 gltD gltD gltB gltB CCB70093.1 CCB70093.1 argG argG argC argC CCB70096.1 CCB70096.1 proA proA proB proB argF argF argB argB argE argE argH argH aroK aroK lysA lysA CCB70291.1 CCB70291.1 aroE aroE CCB70360.1 CCB70360.1 pepD pepD CCB70488.1 CCB70488.1 CCB70587.1 CCB70587.1 leuA leuA leuC leuC leuD leuD leuB leuB CCB70605.1 CCB70605.1 CCB70607.1 CCB70607.1 metF metF CCB70637.1 CCB70637.1 tyrA tyrA aspC3 aspC3 pheA pheA aroA aroA gdhA gdhA CCB70764.1 CCB70764.1 proC proC ahcY ahcY
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
CCB68330.1Cys/Met metabolism PLP-dependent enzyme. (380 aa)
lysCAspartate kinase; Belongs to the aspartokinase family. (416 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (261 aa)
ansAAsparaginase 1. (342 aa)
pruA1-pyrroline-5-carboxylate dehydrogenase. (542 aa)
aspC1Probable aspartate transaminase AspC1. (396 aa)
ilvAThreonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (414 aa)
ilvHAcetolactate synthase, small subunit. (195 aa)
ilvBAcetolactate synthase, large subunit. (583 aa)
ilvDDihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (559 aa)
CCB68992.1Probable asparagine synthetase [glutamine-hydrolyzing]. (536 aa)
aroCChorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (354 aa)
argDAcetylornithine/succinyldiaminopimelatetransamin ase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (396 aa)
CCB69033.1Glu/Leu/Phe/Val dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (408 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (393 aa)
thrA2Bifunctional enzyme : aspartate kinase/homoserine dehydrogenase. (812 aa)
metXHomoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. (320 aa)
metYProbable O-acetylhomoserine aminocarboxypropyltransferase. (421 aa)
asnB2Asparagine synthetase [glutamine-hydrolyzing] AsnB2. (616 aa)
hisH2Imidazole glycerol phosphate synthase subunit HisH2; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (202 aa)
hisF2Imidazole glycerol phosphate synthase subunit HisF2; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (253 aa)
dapBDihydrodipicolinate reductase; Belongs to the DapB family. (233 aa)
aroQ3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (137 aa)
sdaAL-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (475 aa)
CCB69265.1Arginase family protein; Belongs to the arginase family. (372 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (329 aa)
aspC4Probable aspartate transaminase AspC4. (386 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (494 aa)
glnAGlutamate--ammonia ligase; Annotation automatically inferred by bidirectionnal best hit with 341 from FP; Belongs to the glutamine synthetase family. (729 aa)
asnB1Asparagine synthetase [glutamine-hydrolyzing] AsnB1. (631 aa)
pabBPara-aminobenzoate synthase component I. (440 aa)
serAPhosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)
serCPhosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (361 aa)
rocDOrnithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (414 aa)
CCB69564.1Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase family protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (350 aa)
dapD2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferas; Belongs to the transferase hexapeptide repeat family. (271 aa)
aroB3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (356 aa)
hisIEHistidine biosynthesis bifunctional protein HisIE [Includes: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphatase]; In the N-terminal section; belongs to the PRA-CH family. (199 aa)
hisF1Imidazole glycerol phosphate synthase subunit HisF1; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (251 aa)
hisA1-(5-phosphoribosyl)-5-((5-phosphoribosylamino) methylideneamino)imidazole-4-carboxamide isomerase. (242 aa)
hisH1Imidazole glycerol phosphate synthase subunit HisH1; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (194 aa)
hisBHistidine biosynthesis bifunctional protein HisB [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)]. (377 aa)
hisCHistidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (349 aa)
hisDHistidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (430 aa)
hisGATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. (285 aa)
CCB69763.1Cysteine synthase/cystathionine beta-synthase family protein. (346 aa)
CCB69770.1Probable M1 family metalloprotease. (687 aa)
ggt2Gamma-glutamyltransferase. (565 aa)
pepALeucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (By similarity); Belongs to the peptidase M17 family. (481 aa)
thrA1Bifunctional enzyme : aspartate kinase/homoserine dehydrogenase. (815 aa)
thrBHomoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (307 aa)
thrCAmino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5. (430 aa)
putAProline dehydrogenase. (388 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (292 aa)
trpEAnthranilate synthase component I. (466 aa)
pabAPara-aminobenzoate/anthranilate synthase glutamine amidotransferase component II. (205 aa)
trpDAnthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (330 aa)
trpCIndole-3-glycerol phosphate synthase; Belongs to the TrpC family. (260 aa)
trpFPhosphoribosylanthranilate isomerase; Belongs to the TrpF family. (222 aa)
trpBTryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (395 aa)
trpATryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (253 aa)
aspC2Probable aspartate transaminase AspC2. (397 aa)
gltDProbable glutamate synthase (NADPH) small subunit; Amino-acid biosynthesis; L-glutamate biosynthesis via GLT pathway; L-glutamate from 2-oxoglutarate and L-glutamine (NADPH route): step 1/1. (484 aa)
gltBProbable glutamate synthase (NADPH) large subunit. (1501 aa)
CCB70093.1Probable acetyltransferase, GNAT family. (205 aa)
argGArgininosuccinate synthase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3. (395 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (325 aa)
CCB70096.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (376 aa)
proAGlutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (398 aa)
proBGlutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (253 aa)
argFOrnithine carbamoyltransferase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 1/3; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (316 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (264 aa)
argEAcetylornithine deacetylase; Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine from N(2)-acetyl-L-ornithine (linear): step 1/1. (356 aa)
argHArgininosuccinate lyase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3. (426 aa)
aroKShikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (172 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (401 aa)
CCB70291.1Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase family protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (354 aa)
aroEShikimate dehydrogenase. (244 aa)
CCB70360.1Cysteine synthase/cystathionine beta-synthase family protein. (453 aa)
pepDXaa-His dipeptidase. (489 aa)
CCB70488.1Putative ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (501 aa)
CCB70587.1Protein of unknown function. (514 aa)
leuA2-isopropylmalate synthase; Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4; Belongs to the alpha-IPM synthase/homocitrate synthase family. (388 aa)
leuC3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (459 aa)
leuD3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (194 aa)
leuB3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (373 aa)
CCB70605.1Methionine synthase, homocysteine S-methyltransferase domain. (325 aa)
CCB70607.1Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1063 aa)
metFMethylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family. (318 aa)
CCB70637.1Putative phospho-2-dehydro-3-deoxyheptonate aldolase. (360 aa)
tyrAPrephenate dehydrogenase; Amino-acid biosynthesis; L-tyrosine biosynthesis; L-tyrosine from prephenate: step 1/2. (282 aa)
aspC3Probable aspartate transaminase AspC3. (381 aa)
pheAPrephenate dehydratase. (276 aa)
aroA3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (410 aa)
gdhAGlutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
CCB70764.1Putative phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (318 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (258 aa)
ahcYAdenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (439 aa)
Your Current Organism:
Flavobacterium branchiophilum
NCBI taxonomy Id: 1034807
Other names: F. branchiophilum FL-15, Flavobacterium branchiophilum FL-15, Flavobacterium branchiophilum str. FL-15, Flavobacterium branchiophilum strain FL-15
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