STRINGSTRING
dapF dapF pruA pruA argD argD CCB69033.1 CCB69033.1 dapB dapB CCB69265.1 CCB69265.1 glnA glnA rocD rocD dapD dapD putA putA dapA dapA gltD gltD gltB gltB CCB70093.1 CCB70093.1 argG argG argC argC CCB70096.1 CCB70096.1 proA proA proB proB argF argF argB argB argE argE argH argH lysA lysA CCB70488.1 CCB70488.1 gdhA gdhA proC proC
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (261 aa)
pruA1-pyrroline-5-carboxylate dehydrogenase. (542 aa)
argDAcetylornithine/succinyldiaminopimelatetransamin ase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (396 aa)
CCB69033.1Glu/Leu/Phe/Val dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (408 aa)
dapBDihydrodipicolinate reductase; Belongs to the DapB family. (233 aa)
CCB69265.1Arginase family protein; Belongs to the arginase family. (372 aa)
glnAGlutamate--ammonia ligase; Annotation automatically inferred by bidirectionnal best hit with 341 from FP; Belongs to the glutamine synthetase family. (729 aa)
rocDOrnithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (414 aa)
dapD2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferas; Belongs to the transferase hexapeptide repeat family. (271 aa)
putAProline dehydrogenase. (388 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (292 aa)
gltDProbable glutamate synthase (NADPH) small subunit; Amino-acid biosynthesis; L-glutamate biosynthesis via GLT pathway; L-glutamate from 2-oxoglutarate and L-glutamine (NADPH route): step 1/1. (484 aa)
gltBProbable glutamate synthase (NADPH) large subunit. (1501 aa)
CCB70093.1Probable acetyltransferase, GNAT family. (205 aa)
argGArgininosuccinate synthase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3. (395 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (325 aa)
CCB70096.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (376 aa)
proAGlutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (398 aa)
proBGlutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (253 aa)
argFOrnithine carbamoyltransferase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 1/3; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (316 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (264 aa)
argEAcetylornithine deacetylase; Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine from N(2)-acetyl-L-ornithine (linear): step 1/1. (356 aa)
argHArgininosuccinate lyase; Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3. (426 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (401 aa)
CCB70488.1Putative ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (501 aa)
gdhAGlutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (258 aa)
Your Current Organism:
Flavobacterium branchiophilum
NCBI taxonomy Id: 1034807
Other names: F. branchiophilum FL-15, Flavobacterium branchiophilum FL-15, Flavobacterium branchiophilum str. FL-15, Flavobacterium branchiophilum strain FL-15
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