STRINGSTRING
kynU kynU bioF bioF aspC1 aspC1 sufS sufS bioA bioA aspC3 aspC3 hemL hemL lysA lysA CCB70105.1 CCB70105.1 CCB70096.1 CCB70096.1 glyA glyA CCB69950.1 CCB69950.1 aspC2 aspC2 thrC thrC hisC hisC rocD rocD serC serC CCB69485.1 CCB69485.1 aspC4 aspC4 CCB69264.1 CCB69264.1 CCB69150.1 CCB69150.1 metY metY metZ metZ ilvA ilvA argD argD mur/alr mur/alr CCB68330.1 CCB68330.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (426 aa)
bioF8-amino-7-oxononanoate synthase; Biotin metabolism. (378 aa)
aspC1Probable aspartate transaminase AspC1. (396 aa)
sufSCysteine desulfurase, SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (404 aa)
bioAAdenosylmethionine--8-amino-7- oxononanoatetransaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)
aspC3Probable aspartate transaminase AspC3. (381 aa)
hemLGlutamate-1-semialdehyde aminotransferase. (428 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (401 aa)
CCB70105.1Aminotransferase, class V. (384 aa)
CCB70096.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (376 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (424 aa)
CCB69950.1Protein of unknown function; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (220 aa)
aspC2Probable aspartate transaminase AspC2. (397 aa)
thrCAmino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5. (430 aa)
hisCHistidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (349 aa)
rocDOrnithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (414 aa)
serCPhosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (361 aa)
CCB69485.1Putative aminotransferase. (496 aa)
aspC4Probable aspartate transaminase AspC4. (386 aa)
CCB69264.1Aminocarboxylic acid CoA-ligase. (419 aa)
CCB69150.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)
metYProbable O-acetylhomoserine aminocarboxypropyltransferase. (421 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (393 aa)
ilvAThreonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (414 aa)
argDAcetylornithine/succinyldiaminopimelatetransamin ase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (396 aa)
mur/alrBifunctional enzyme : Mur ligase domain protein and alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (812 aa)
CCB68330.1Cys/Met metabolism PLP-dependent enzyme. (380 aa)
Your Current Organism:
Flavobacterium branchiophilum
NCBI taxonomy Id: 1034807
Other names: F. branchiophilum FL-15, Flavobacterium branchiophilum FL-15, Flavobacterium branchiophilum str. FL-15, Flavobacterium branchiophilum strain FL-15
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