(29 nodes) U2 snRNP, and U1 snRNA binding network (Aspergillus versicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9P3A3	RRM domain-containing protein. (370 aa)
	A0A1L9P3G7	Uncharacterized protein. (252 aa)
	A0A1L9P3W4	Uncharacterized protein. (252 aa)
	A0A1L9P7V5	Uncharacterized protein. (1174 aa)
	A0A1L9P8H2	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1L9P9S1	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A1L9PAH4	zf-U1 domain-containing protein. (181 aa)
	A0A1L9PAR2	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A0A1L9PAR7	Uncharacterized protein. (417 aa)
	A0A1L9PAT9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A1L9PBB6	SF3b1 domain-containing protein. (1228 aa)
	A0A1L9PD06	Uncharacterized protein. (108 aa)
	A0A1L9PGN4	Uncharacterized protein. (531 aa)
	A0A1L9PJ20	Nuclear cap-binding protein subunit 2. (177 aa)
	A0A1L9PLZ9	Uncharacterized protein. (186 aa)
	A0A1L9PM93	CPSF_A domain-containing protein. (1209 aa)
	A0A1L9PMB6	Matrin-type domain-containing protein. (237 aa)
	A0A1L9PNI4	RRM domain-containing protein. (187 aa)
	A0A1L9PNP2	Uncharacterized protein. (97 aa)
	A0A1L9PQA6	Sm domain-containing protein. (216 aa)
	A0A1L9PRB6	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	A0A1L9PSB5	Sm domain-containing protein. (86 aa)
	A0A1L9PSC9	Uncharacterized protein. (160 aa)
	A0A1L9PSY6	RRM domain-containing protein. (113 aa)
	A0A1L9PT36	Uncharacterized protein. (831 aa)
	A0A1L9PT37	Uncharacterized protein. (355 aa)
	A0A1L9PXB4	C2H2-type domain-containing protein. (501 aa)
	A0A1L9PY29	PSP domain-containing protein. (553 aa)
	A0A1L9Q013	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)

Your Current Organism:

Aspergillus versicolor

NCBI taxonomy Id: 1036611
Other names: A. versicolor CBS 583.65, Aspergillus versicolor CBS 583.65

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9P3A3	A0A1L9P3G7	RRM domain-containing protein.	Uncharacterized protein.	0.977
A0A1L9P3A3	A0A1L9P3W4	RRM domain-containing protein.	Uncharacterized protein.	0.984
A0A1L9P3A3	A0A1L9P7V5	RRM domain-containing protein.	Uncharacterized protein.	0.762
A0A1L9P3A3	A0A1L9P8H2	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.996
A0A1L9P3A3	A0A1L9P9S1	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.996
A0A1L9P3A3	A0A1L9PAH4	RRM domain-containing protein.	zf-U1 domain-containing protein.	0.994
A0A1L9P3A3	A0A1L9PAR2	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.984
A0A1L9P3A3	A0A1L9PAR7	RRM domain-containing protein.	Uncharacterized protein.	0.984
A0A1L9P3A3	A0A1L9PAT9	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.995
A0A1L9P3A3	A0A1L9PBB6	RRM domain-containing protein.	SF3b1 domain-containing protein.	0.973
A0A1L9P3A3	A0A1L9PD06	RRM domain-containing protein.	Uncharacterized protein.	0.962
A0A1L9P3A3	A0A1L9PGN4	RRM domain-containing protein.	Uncharacterized protein.	0.683
A0A1L9P3A3	A0A1L9PJ20	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.993
A0A1L9P3A3	A0A1L9PLZ9	RRM domain-containing protein.	Uncharacterized protein.	0.909
A0A1L9P3A3	A0A1L9PM93	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.949
A0A1L9P3A3	A0A1L9PMB6	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.934
A0A1L9P3A3	A0A1L9PNI4	RRM domain-containing protein.	RRM domain-containing protein.	0.977
A0A1L9P3A3	A0A1L9PNP2	RRM domain-containing protein.	Uncharacterized protein.	0.976
A0A1L9P3A3	A0A1L9PQA6	RRM domain-containing protein.	Sm domain-containing protein.	0.982
A0A1L9P3A3	A0A1L9PRB6	RRM domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.962