48 items (Aspergillus versicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9PME8	U1-type domain-containing protein. (270 aa)
	A0A1L9PMB6	Matrin-type domain-containing protein. (237 aa)
	A0A1L9PLH4	GH16 domain-containing protein. (379 aa)
	A0A1L9PLA1	Uncharacterized protein. (374 aa)
	A0A1L9PKU3	Uncharacterized protein. (321 aa)
	A0A1L9PJ20	Nuclear cap-binding protein subunit 2. (177 aa)
	A0A1L9PIH0	PWI domain-containing protein. (761 aa)
	A0A1L9PI55	Cir_N domain-containing protein. (423 aa)
	A0A1L9PGN4	Uncharacterized protein. (531 aa)
	A0A1L9PG74	Uncharacterized protein. (115 aa)
	A0A1L9PBZ3	Uncharacterized protein. (412 aa)
	A0A1L9P331	Uncharacterized protein. (474 aa)
	A0A1L9P7M4	Uncharacterized protein. (778 aa)
	A0A1L9P7N3	Uncharacterized protein. (674 aa)
	A0A1L9P3A1	MFAP1 domain-containing protein. (474 aa)
	A0A1L9P3A3	RRM domain-containing protein. (370 aa)
	A0A1L9P3I9	Uncharacterized protein. (851 aa)
	A0A1L9P5R1	SFM domain-containing protein. (372 aa)
	A0A1L9P5Y8	Sm domain-containing protein. (132 aa)
	A0A1L9P7E1	RRM domain-containing protein. (421 aa)
	A0A1L9Q013	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A0A1L9PZU8	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (561 aa)
	A0A1L9PZ76	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1423 aa)
	A0A1L9PZ67	RRM domain-containing protein. (383 aa)
	A0A1L9PYU3	Uncharacterized protein. (352 aa)
	A0A1L9PY29	PSP domain-containing protein. (553 aa)
	A0A1L9PXB4	C2H2-type domain-containing protein. (501 aa)
	A0A1L9PX20	Uncharacterized protein. (272 aa)
	A0A1L9PU00	Uncharacterized protein. (281 aa)
	A0A1L9PT37	Uncharacterized protein. (355 aa)
	A0A1L9PSY6	RRM domain-containing protein. (113 aa)
	A0A1L9PQA6	Sm domain-containing protein. (216 aa)
	A0A1L9PP12	Uncharacterized protein. (254 aa)
	A0A1L9PNV8	Uncharacterized protein. (1579 aa)
	A0A1L9PNI4	RRM domain-containing protein. (187 aa)
	A0A1L9P7V5	Uncharacterized protein. (1174 aa)
	A0A1L9PMP0	Uncharacterized protein. (703 aa)
	A0A1L9PMH7	G-patch domain-containing protein. (774 aa)
	A0A1L9PBB6	SF3b1 domain-containing protein. (1228 aa)
	A0A1L9PAT9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A1L9PAH4	zf-U1 domain-containing protein. (181 aa)
	A0A1L9P9T1	Uncharacterized protein. (279 aa)
	A0A1L9P9S1	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A1L9P9R0	Uncharacterized protein. (567 aa)
	A0A1L9P9C6	Uncharacterized protein. (628 aa)
	A0A1L9P8H2	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1L9P875	Tr-type G domain-containing protein. (984 aa)
	A0A1L9P811	Uncharacterized protein. (200 aa)

Your Current Organism:

Aspergillus versicolor

NCBI taxonomy Id: 1036611
Other names: A. versicolor CBS 583.65, Aspergillus versicolor CBS 583.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9P331	A0A1L9P3A1	Uncharacterized protein.	MFAP1 domain-containing protein.	0.423
A0A1L9P331	A0A1L9P3A3	Uncharacterized protein.	RRM domain-containing protein.	0.691
A0A1L9P331	A0A1L9P3I9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1L9P331	A0A1L9P5R1	Uncharacterized protein.	SFM domain-containing protein.	0.611
A0A1L9P331	A0A1L9P7M4	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A1L9P331	A0A1L9P7N3	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1L9P331	A0A1L9P7V5	Uncharacterized protein.	Uncharacterized protein.	0.633
A0A1L9P331	A0A1L9P811	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A1L9P331	A0A1L9P875	Uncharacterized protein.	Tr-type G domain-containing protein.	0.988
A0A1L9P331	A0A1L9P8H2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.981
A0A1L9P331	A0A1L9P9C6	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A1L9P331	A0A1L9P9R0	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A1L9P331	A0A1L9P9S1	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.986
A0A1L9P331	A0A1L9P9T1	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A1L9P331	A0A1L9PAH4	Uncharacterized protein.	zf-U1 domain-containing protein.	0.503
A0A1L9P331	A0A1L9PAT9	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.981
A0A1L9P331	A0A1L9PBB6	Uncharacterized protein.	SF3b1 domain-containing protein.	0.980
A0A1L9P331	A0A1L9PBZ3	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L9P331	A0A1L9PG74	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A1L9P331	A0A1L9PGN4	Uncharacterized protein.	Uncharacterized protein.	0.980