(41 nodes) Nucleotide-excision repair network (Aspergillus versicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9PET9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2231 aa)
	A0A1L9PFH2	CUE domain-containing protein. (859 aa)
	A0A1L9PHZ9	Uncharacterized protein. (1193 aa)
	A0A1L9PIK2	DNA ligase. (885 aa)
	A0A1L9PIW9	RPOL9 domain-containing protein. (107 aa)
	A0A1L9P393	RRM domain-containing protein. (248 aa)
	A0A1L9P3L7	Uncharacterized protein. (378 aa)
	A0A1L9P572	RPA_C domain-containing protein. (273 aa)
	A0A1L9P5J3	Uncharacterized protein. (578 aa)
	A0A1L9P5T9	Helicase ATP-binding domain-containing protein. (789 aa)
	A0A1L9P9E1	RING-type domain-containing protein. (375 aa)
	A0A1L9PBP6	Uncharacterized protein. (373 aa)
	A0A1L9PCW2	DNA polymerase. (1110 aa)
	A0A1L9PCY5	Uncharacterized protein. (454 aa)
	A0A1L9PE60	Uncharacterized protein. (72 aa)
	A0A1L9PJ13	Uncharacterized protein. (897 aa)
	A0A1L9PLB7	Uncharacterized protein. (953 aa)
	A0A1L9PLL4	Uncharacterized protein. (1020 aa)
	A0A1L9PLP2	XPA_C domain-containing protein. (375 aa)
	A0A1L9PMG8	Uncharacterized protein. (639 aa)
	A0A1L9PN58	AAA domain-containing protein; Belongs to the AAA ATPase family. (393 aa)
	A0A1L9PPS6	Plus3 domain-containing protein. (603 aa)
	A0A1L9PQR9	Uncharacterized protein. (334 aa)
	NTH1	Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (978 aa)
	A0A1L9PSU1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (603 aa)
	A0A1L9PT71	Checkpoint protein; Belongs to the HUS1 family. (369 aa)
	A0A1L9PTN1	Uncharacterized protein. (87 aa)
	A0A1L9Q306	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	A0A1L9Q2J7	Uncharacterized protein. (829 aa)
	A0A1L9Q174	Uncharacterized protein. (388 aa)
	A0A1L9PZV3	ENDO3c domain-containing protein. (415 aa)
	A0A1L9PZD3	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	A0A1L9PZC8	AAA_lid_3 domain-containing protein. (56 aa)
	A0A1L9PZA7	AAA domain-containing protein; Belongs to the AAA ATPase family. (304 aa)
	A0A1L9PZA3	Uncharacterized protein. (1210 aa)
	A0A1L9PXP6	WD_REPEATS_REGION domain-containing protein. (473 aa)
	A0A1L9PTT0	ERCC4 domain-containing protein. (880 aa)
	A0A1L9PUZ1	Uncharacterized protein. (582 aa)
	A0A1L9PUZ6	Uncharacterized protein. (972 aa)
	A0A1L9PX10	DNA_LIGASE_A3 domain-containing protein. (1064 aa)
	A0A1L9PXG9	Uncharacterized protein. (1146 aa)

Your Current Organism:

Aspergillus versicolor

NCBI taxonomy Id: 1036611
Other names: A. versicolor CBS 583.65, Aspergillus versicolor CBS 583.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L9P3L7	A0A1L9P572	A0A1L9P3L7	A0A1L9P572	Uncharacterized protein.	RPA_C domain-containing protein.	0.715
A0A1L9P3L7	A0A1L9P5T9	A0A1L9P3L7	A0A1L9P5T9	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.999
A0A1L9P3L7	A0A1L9P9E1	A0A1L9P3L7	A0A1L9P9E1	Uncharacterized protein.	RING-type domain-containing protein.	0.996
A0A1L9P3L7	A0A1L9PBP6	A0A1L9P3L7	A0A1L9PBP6	Uncharacterized protein.	Uncharacterized protein.	0.814
A0A1L9P3L7	A0A1L9PE60	A0A1L9P3L7	A0A1L9PE60	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1L9P3L7	A0A1L9PIW9	A0A1L9P3L7	A0A1L9PIW9	Uncharacterized protein.	RPOL9 domain-containing protein.	0.978
A0A1L9P3L7	A0A1L9PJ13	A0A1L9P3L7	A0A1L9PJ13	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A1L9P3L7	A0A1L9PLB7	A0A1L9P3L7	A0A1L9PLB7	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A1L9P3L7	A0A1L9PLL4	A0A1L9P3L7	A0A1L9PLL4	Uncharacterized protein.	Uncharacterized protein.	0.672
A0A1L9P3L7	A0A1L9PLP2	A0A1L9P3L7	A0A1L9PLP2	Uncharacterized protein.	XPA_C domain-containing protein.	0.921
A0A1L9P3L7	A0A1L9PMG8	A0A1L9P3L7	A0A1L9PMG8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1L9P3L7	A0A1L9PQR9	A0A1L9P3L7	A0A1L9PQR9	Uncharacterized protein.	Uncharacterized protein.	0.802
A0A1L9P3L7	A0A1L9PTN1	A0A1L9P3L7	A0A1L9PTN1	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A1L9P3L7	A0A1L9PTT0	A0A1L9P3L7	A0A1L9PTT0	Uncharacterized protein.	ERCC4 domain-containing protein.	0.655
A0A1L9P3L7	A0A1L9PXG9	A0A1L9P3L7	A0A1L9PXG9	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A1L9P3L7	A0A1L9PXP6	A0A1L9P3L7	A0A1L9PXP6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.701
A0A1L9P3L7	A0A1L9PZA3	A0A1L9P3L7	A0A1L9PZA3	Uncharacterized protein.	Uncharacterized protein.	0.672
A0A1L9P3L7	A0A1L9PZD3	A0A1L9P3L7	A0A1L9PZD3	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A1L9P3L7	A0A1L9Q174	A0A1L9P3L7	A0A1L9Q174	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A1L9P3L7	A0A1L9Q2J7	A0A1L9P3L7	A0A1L9Q2J7	Uncharacterized protein.	Uncharacterized protein.	0.999