(10 nodes) mTORC1-mediated signalling network (Aspergillus versicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9PVN1	Uncharacterized protein. (360 aa)
	A0A1L9P9J1	Uncharacterized protein. (154 aa)
	A0A1L9PAC8	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (237 aa)
	A0A1L9PGK9	Uncharacterized protein. (407 aa)
	A0A1L9PIJ9	MIF4G domain-containing protein. (1523 aa)
	A0A1L9PRJ1	Uncharacterized protein. (528 aa)
	A0A1L9PSM2	Uncharacterized protein. (715 aa)
	A0A1L9PU75	Uncharacterized protein. (207 aa)
	A0A1L9PVU0	Peptidylprolyl isomerase. (108 aa)
	A0A1L9PZ51	Peptidylprolyl isomerase. (125 aa)

Your Current Organism:

Aspergillus versicolor

NCBI taxonomy Id: 1036611
Other names: A. versicolor CBS 583.65, Aspergillus versicolor CBS 583.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9PAC8	A0A1L9PGK9	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.695
A0A1L9PAC8	A0A1L9PIJ9	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	MIF4G domain-containing protein.	0.695
A0A1L9PAC8	A0A1L9PRJ1	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.695
A0A1L9PAC8	A0A1L9PSM2	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.695
A0A1L9PAC8	A0A1L9PVU0	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Peptidylprolyl isomerase.	0.681
A0A1L9PAC8	A0A1L9PZ51	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Peptidylprolyl isomerase.	0.681
A0A1L9PGK9	A0A1L9PAC8	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.695
A0A1L9PIJ9	A0A1L9PAC8	MIF4G domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.695
A0A1L9PRJ1	A0A1L9PAC8	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.695
A0A1L9PSM2	A0A1L9PAC8	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.695
A0A1L9PVU0	A0A1L9PAC8	Peptidylprolyl isomerase.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.681
A0A1L9PZ51	A0A1L9PAC8	Peptidylprolyl isomerase.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.681