(10 nodes) Extension to Ser/Thr-type protein kinases network (Aspergillus versicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9P3Q7	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1096 aa)
	A0A1L9PFT9	Uncharacterized protein. (626 aa)
	A0A1L9PI54	Non-specific serine/threonine protein kinase. (636 aa)
	A0A1L9PJ67	Uncharacterized protein; Belongs to the protein kinase superfamily. (459 aa)
	A0A1L9PL91	Uncharacterized protein. (807 aa)
	A0A1L9PMD3	Uncharacterized protein. (638 aa)
	A0A1L9PP01	Uncharacterized protein; Belongs to the protein kinase superfamily. (396 aa)
	A0A1L9PS61	Uncharacterized protein. (2053 aa)
	A0A1L9PTH8	Non-specific serine/threonine protein kinase. (655 aa)
	A0A1L9PV32	Non-specific serine/threonine protein kinase. (919 aa)

Your Current Organism:

Aspergillus versicolor

NCBI taxonomy Id: 1036611
Other names: A. versicolor CBS 583.65, Aspergillus versicolor CBS 583.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9P3Q7	A0A1L9PFT9	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.441
A0A1L9P3Q7	A0A1L9PI54	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Non-specific serine/threonine protein kinase.	0.464
A0A1L9P3Q7	A0A1L9PP01	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.459
A0A1L9P3Q7	A0A1L9PV32	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Non-specific serine/threonine protein kinase.	0.441
A0A1L9PFT9	A0A1L9P3Q7	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.441
A0A1L9PFT9	A0A1L9PJ67	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.765
A0A1L9PFT9	A0A1L9PL91	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A1L9PFT9	A0A1L9PMD3	Uncharacterized protein.	Uncharacterized protein.	0.664
A0A1L9PFT9	A0A1L9PS61	Uncharacterized protein.	Uncharacterized protein.	0.856
A0A1L9PFT9	A0A1L9PTH8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.668
A0A1L9PI54	A0A1L9P3Q7	Non-specific serine/threonine protein kinase.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.464
A0A1L9PI54	A0A1L9PJ67	Non-specific serine/threonine protein kinase.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.759
A0A1L9PI54	A0A1L9PL91	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.646
A0A1L9PI54	A0A1L9PMD3	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.664
A0A1L9PI54	A0A1L9PS61	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.865
A0A1L9PI54	A0A1L9PTH8	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.662
A0A1L9PJ67	A0A1L9PFT9	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.765
A0A1L9PJ67	A0A1L9PI54	Uncharacterized protein; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.759
A0A1L9PJ67	A0A1L9PL91	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.661
A0A1L9PJ67	A0A1L9PMD3	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.667