5 items (Aspergillus sydowii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9T0J1	Uncharacterized protein; Belongs to the actin family. (682 aa)
	A0A1L9T6Q7	Uncharacterized protein. (697 aa)
	A0A1L9TQE2	Uncharacterized protein. (885 aa)
	A0A1L9TZK8	Uncharacterized protein. (1400 aa)
	A0A1L9U0J4	Uncharacterized protein. (757 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9T0J1	A0A1L9T6Q7	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.972
A0A1L9T0J1	A0A1L9TQE2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.979
A0A1L9T0J1	A0A1L9TZK8	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.968
A0A1L9T0J1	A0A1L9U0J4	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.978
A0A1L9T6Q7	A0A1L9T0J1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.972
A0A1L9T6Q7	A0A1L9TQE2	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1L9T6Q7	A0A1L9TZK8	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1L9T6Q7	A0A1L9U0J4	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A1L9TQE2	A0A1L9T0J1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.979
A0A1L9TQE2	A0A1L9T6Q7	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1L9TQE2	A0A1L9TZK8	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L9TQE2	A0A1L9U0J4	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L9TZK8	A0A1L9T0J1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.968
A0A1L9TZK8	A0A1L9T6Q7	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1L9TZK8	A0A1L9TQE2	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L9TZK8	A0A1L9U0J4	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A1L9U0J4	A0A1L9T0J1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.978
A0A1L9U0J4	A0A1L9T6Q7	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A1L9U0J4	A0A1L9TQE2	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L9U0J4	A0A1L9TZK8	Uncharacterized protein.	Uncharacterized protein.	0.995