21 items (Aspergillus sydowii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9TPL5	Uncharacterized protein. (407 aa)
	A0A1L9TQE4	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (245 aa)
	A0A1L9TQG1	Uncharacterized protein; Belongs to the DEAD box helicase family. (419 aa)
	A0A1L9TRD4	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1097 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (738 aa)
	A0A1L9TVD9	HTH La-type RNA-binding domain-containing protein. (803 aa)
	A0A1L9TVE5	LsmAD domain-containing protein. (1043 aa)
	A0A1L9TW10	Uncharacterized protein. (892 aa)
	A0A1L9TWJ0	Uncharacterized protein. (590 aa)
	A0A1L9TFV0	Uncharacterized protein. (263 aa)
	A0A1L9TFT7	Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
	A0A1L9TEK6	Uncharacterized protein. (523 aa)
	A0A1L9TCF1	PAT1 domain-containing protein. (819 aa)
	A0A1L9TAB1	Uncharacterized protein. (1455 aa)
	NIP1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (865 aa)
	A0A1L9T7F8	eRF1_1 domain-containing protein. (435 aa)
	A0A1L9SZH2	RRM_2 domain-containing protein. (664 aa)
	A0A1L9TH35	MIF4G domain-containing protein. (1522 aa)
	A0A1L9TH95	YrdC-like domain-containing protein. (1525 aa)
	A0A1L9TKX8	AD domain-containing protein. (233 aa)
	A0A1L9TL93	Uncharacterized protein. (528 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L9T7F8	A0A1L9TEK6	A0A1L9T7F8	A0A1L9TEK6	eRF1_1 domain-containing protein.	Uncharacterized protein.	0.415
A0A1L9T7F8	A0A1L9TFT7	A0A1L9T7F8	A0A1L9TFT7	eRF1_1 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.511
A0A1L9T7F8	A0A1L9TFV0	A0A1L9T7F8	A0A1L9TFV0	eRF1_1 domain-containing protein.	Uncharacterized protein.	0.678
A0A1L9T7F8	A0A1L9TH35	A0A1L9T7F8	A0A1L9TH35	eRF1_1 domain-containing protein.	MIF4G domain-containing protein.	0.415
A0A1L9T7F8	A0A1L9TL93	A0A1L9T7F8	A0A1L9TL93	eRF1_1 domain-containing protein.	Uncharacterized protein.	0.415
A0A1L9T7F8	A0A1L9TPL5	A0A1L9T7F8	A0A1L9TPL5	eRF1_1 domain-containing protein.	Uncharacterized protein.	0.415
A0A1L9T7F8	A0A1L9TQE4	A0A1L9T7F8	A0A1L9TQE4	eRF1_1 domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.615
A0A1L9T7F8	NIP1	A0A1L9T7F8	A0A1L9T8S8	eRF1_1 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.679
A0A1L9T7F8	PRT1	A0A1L9T7F8	A0A1L9TS64	eRF1_1 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.747
A0A1L9TAB1	A0A1L9TQG1	A0A1L9TAB1	A0A1L9TQG1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.460
A0A1L9TAB1	A0A1L9TRD4	A0A1L9TAB1	A0A1L9TRD4	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.492
A0A1L9TCF1	A0A1L9TFV0	A0A1L9TCF1	A0A1L9TFV0	PAT1 domain-containing protein.	Uncharacterized protein.	0.984
A0A1L9TCF1	A0A1L9TQG1	A0A1L9TCF1	A0A1L9TQG1	PAT1 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.995
A0A1L9TCF1	A0A1L9TW10	A0A1L9TCF1	A0A1L9TW10	PAT1 domain-containing protein.	Uncharacterized protein.	0.431
A0A1L9TCF1	A0A1L9TWJ0	A0A1L9TCF1	A0A1L9TWJ0	PAT1 domain-containing protein.	Uncharacterized protein.	0.773
A0A1L9TEK6	A0A1L9T7F8	A0A1L9TEK6	A0A1L9T7F8	Uncharacterized protein.	eRF1_1 domain-containing protein.	0.415
A0A1L9TEK6	A0A1L9TFV0	A0A1L9TEK6	A0A1L9TFV0	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1L9TEK6	A0A1L9TQE4	A0A1L9TEK6	A0A1L9TQE4	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.954
A0A1L9TEK6	A0A1L9TQG1	A0A1L9TEK6	A0A1L9TQG1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.699
A0A1L9TEK6	A0A1L9TVD9	A0A1L9TEK6	A0A1L9TVD9	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.733