9 items (Aspergillus sydowii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9TU42	Zn(2)-C6 fungal-type domain-containing protein. (789 aa)
	A0A1L9TY39	RFX-type winged-helix domain-containing protein. (739 aa)
	A0A1L9T0J1	Uncharacterized protein; Belongs to the actin family. (682 aa)
	A0A1L9TQE2	Uncharacterized protein. (885 aa)
	A0A1L9TKU5	Uncharacterized protein. (650 aa)
	A0A1L9TIA7	Zn(2)-C6 fungal-type domain-containing protein. (764 aa)
	A0A1L9TEA4	Uncharacterized protein. (594 aa)
	A0A1L9T469	Zn(2)-C6 fungal-type domain-containing protein. (773 aa)
	A0A1L9T0T2	Uncharacterized protein. (569 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9T0J1	A0A1L9T0T2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.818
A0A1L9T0J1	A0A1L9T469	Uncharacterized protein; Belongs to the actin family.	Zn(2)-C6 fungal-type domain-containing protein.	0.692
A0A1L9T0J1	A0A1L9TEA4	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.966
A0A1L9T0J1	A0A1L9TIA7	Uncharacterized protein; Belongs to the actin family.	Zn(2)-C6 fungal-type domain-containing protein.	0.692
A0A1L9T0J1	A0A1L9TKU5	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.403
A0A1L9T0J1	A0A1L9TQE2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.979
A0A1L9T0J1	A0A1L9TU42	Uncharacterized protein; Belongs to the actin family.	Zn(2)-C6 fungal-type domain-containing protein.	0.692
A0A1L9T0J1	A0A1L9TY39	Uncharacterized protein; Belongs to the actin family.	RFX-type winged-helix domain-containing protein.	0.960
A0A1L9T0T2	A0A1L9T0J1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.818
A0A1L9T0T2	A0A1L9T469	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.468
A0A1L9T0T2	A0A1L9TEA4	Uncharacterized protein.	Uncharacterized protein.	0.735
A0A1L9T0T2	A0A1L9TIA7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.468
A0A1L9T0T2	A0A1L9TKU5	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A1L9T0T2	A0A1L9TQE2	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A1L9T0T2	A0A1L9TU42	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.468
A0A1L9T0T2	A0A1L9TY39	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.767
A0A1L9T469	A0A1L9T0J1	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.692
A0A1L9T469	A0A1L9T0T2	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.468
A0A1L9T469	A0A1L9TEA4	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.617
A0A1L9T469	A0A1L9TQE2	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.649