24 items (Aspergillus sydowii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9TH49	SGNH_hydro domain-containing protein. (258 aa)
	A0A1L9THN0	CID domain-containing protein. (240 aa)
	A0A1L9THT8	Uncharacterized protein. (692 aa)
	A0A1L9TKY8	FAD_binding_3 domain-containing protein. (611 aa)
	A0A1L9TNA4	Uncharacterized protein. (607 aa)
	A0A1L9TNR2	Uncharacterized protein; Belongs to the cyclin family. (507 aa)
	A0A1L9TP34	Uncharacterized protein. (304 aa)
	A0A1L9TPS4	FAD_binding_3 domain-containing protein. (599 aa)
	A0A1L9TGV3	Uncharacterized protein. (491 aa)
	A0A1L9TGT2	CDC73_C domain-containing protein. (461 aa)
	A0A1L9TBQ6	Plus3 domain-containing protein. (601 aa)
	A0A1L9TA54	Uncharacterized protein. (1028 aa)
	A0A1L9TA08	FAD_binding_3 domain-containing protein. (619 aa)
	A0A1L9T7I4	Protein kinase domain-containing protein. (549 aa)
	A0A1L9T7F4	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (122 aa)
	A0A1L9T7A0	Uncharacterized protein. (1596 aa)
	A0A1L9T6X2	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (576 aa)
	A0A1L9T345	Protein kinase domain-containing protein. (1010 aa)
	A0A1L9T2J1	FAD_binding_3 domain-containing protein. (582 aa)
	A0A1L9SZU4	FAD_binding_3 domain-containing protein. (569 aa)
	A0A1L9TV96	Uncharacterized protein. (457 aa)
	A0A1L9TVE6	WD_REPEATS_REGION domain-containing protein. (305 aa)
	A0A1L9TX95	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1017 aa)
	A0A1L9THE9	Uncharacterized protein. (344 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9T345	A0A1L9T6X2	Protein kinase domain-containing protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.722
A0A1L9T345	A0A1L9T7A0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.552
A0A1L9T345	A0A1L9T7I4	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.785
A0A1L9T345	A0A1L9TA54	Protein kinase domain-containing protein.	Uncharacterized protein.	0.781
A0A1L9T345	A0A1L9TBQ6	Protein kinase domain-containing protein.	Plus3 domain-containing protein.	0.599
A0A1L9T345	A0A1L9TGT2	Protein kinase domain-containing protein.	CDC73_C domain-containing protein.	0.711
A0A1L9T345	A0A1L9TGV3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.406
A0A1L9T345	A0A1L9THE9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.693
A0A1L9T345	A0A1L9THN0	Protein kinase domain-containing protein.	CID domain-containing protein.	0.970
A0A1L9T345	A0A1L9THT8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.952
A0A1L9T345	A0A1L9TNR2	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.979
A0A1L9T345	A0A1L9TP34	Protein kinase domain-containing protein.	Uncharacterized protein.	0.760
A0A1L9T345	A0A1L9TV96	Protein kinase domain-containing protein.	Uncharacterized protein.	0.680
A0A1L9T345	A0A1L9TX95	Protein kinase domain-containing protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.951
A0A1L9T6X2	A0A1L9T345	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Protein kinase domain-containing protein.	0.722
A0A1L9T6X2	A0A1L9T7A0	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Uncharacterized protein.	0.995
A0A1L9T6X2	A0A1L9T7F4	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.625
A0A1L9T6X2	A0A1L9T7I4	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Protein kinase domain-containing protein.	0.722
A0A1L9T6X2	A0A1L9TA54	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Uncharacterized protein.	0.997
A0A1L9T6X2	A0A1L9TBQ6	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	Plus3 domain-containing protein.	0.986