36 items (Aspergillus sydowii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9SZN5	Uncharacterized protein. (356 aa)
	A0A1L9TUU8	Uncharacterized protein. (913 aa)
	A0A1L9TV56	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	A0A1L9TVF7	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (319 aa)
	A0A1L9TVN4	CBF domain-containing protein. (1118 aa)
	A0A1L9TWH1	Uncharacterized protein. (768 aa)
	A0A1L9TWY6	Uncharacterized protein. (735 aa)
	A0A1L9TY63	RNA helicase. (613 aa)
	A0A1L9TYL8	NUC153 domain-containing protein. (730 aa)
	A0A1L9TYQ4	Utp12 domain-containing protein. (839 aa)
	A0A1L9T0N4	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (659 aa)
	A0A1L9SXM9	Uncharacterized protein. (1028 aa)
	A0A1L9T0P6	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (364 aa)
	A0A1L9T0W0	RRM domain-containing protein. (460 aa)
	A0A1L9T1F3	F-box domain-containing protein. (972 aa)
	A0A1L9T373	WD_REPEATS_REGION domain-containing protein. (902 aa)
	A0A1L9T3M5	RRM domain-containing protein. (314 aa)
	A0A1L9TAE2	RING-type domain-containing protein. (727 aa)
	A0A1L9TAV9	Zn(2)-C6 fungal-type domain-containing protein. (696 aa)
	A0A1L9TCF4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	A0A1L9TEI3	WD_REPEATS_REGION domain-containing protein. (581 aa)
	A0A1L9TEQ6	Uncharacterized protein. (553 aa)
	A0A1L9TGB6	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (500 aa)
	A0A1L9TH94	Uncharacterized protein. (233 aa)
	A0A1L9THF8	S4 RNA-binding domain-containing protein. (188 aa)
	A0A1L9TMD6	RNA helicase. (641 aa)
	A0A1L9TNK8	Uncharacterized protein. (393 aa)
	A0A1L9TNX9	Uncharacterized protein; Belongs to the DEAD box helicase family. (530 aa)
	A0A1L9TPF0	Uncharacterized protein. (294 aa)
	A0A1L9TPI0	RRM domain-containing protein. (331 aa)
	A0A1L9TQG6	U3 small nucleolar RNA-associated protein 22. (1112 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1006 aa)
	A0A1L9TRY9	WD_REPEATS_REGION domain-containing protein. (962 aa)
	A0A1L9TTN3	Brix domain-containing protein. (299 aa)
	A0A1L9TUG2	CBF domain-containing protein. (527 aa)
	A0A1L9TUQ4	Uncharacterized protein. (397 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L9SXM9	A0A1L9SZN5	A0A1L9SXM9	A0A1L9SZN5	Uncharacterized protein.	Uncharacterized protein.	0.731
A0A1L9SXM9	A0A1L9T0N4	A0A1L9SXM9	A0A1L9T0N4	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.997
A0A1L9SXM9	A0A1L9T0P6	A0A1L9SXM9	A0A1L9T0P6	Uncharacterized protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.959
A0A1L9SXM9	A0A1L9T0W0	A0A1L9SXM9	A0A1L9T0W0	Uncharacterized protein.	RRM domain-containing protein.	0.886
A0A1L9SXM9	A0A1L9T373	A0A1L9SXM9	A0A1L9T373	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1L9SXM9	A0A1L9T3M5	A0A1L9SXM9	A0A1L9T3M5	Uncharacterized protein.	RRM domain-containing protein.	0.996
A0A1L9SXM9	A0A1L9TAV9	A0A1L9SXM9	A0A1L9TAV9	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.791
A0A1L9SXM9	A0A1L9TCF4	A0A1L9SXM9	A0A1L9TCF4	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.604
A0A1L9SXM9	A0A1L9TEI3	A0A1L9SXM9	A0A1L9TEI3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1L9SXM9	A0A1L9TEQ6	A0A1L9SXM9	A0A1L9TEQ6	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A1L9SXM9	A0A1L9TGB6	A0A1L9SXM9	A0A1L9TGB6	Uncharacterized protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.664
A0A1L9SXM9	A0A1L9TH94	A0A1L9SXM9	A0A1L9TH94	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1L9SXM9	A0A1L9THF8	A0A1L9SXM9	A0A1L9THF8	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.992
A0A1L9SXM9	A0A1L9TMD6	A0A1L9SXM9	A0A1L9TMD6	Uncharacterized protein.	RNA helicase.	0.779
A0A1L9SXM9	A0A1L9TNK8	A0A1L9SXM9	A0A1L9TNK8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1L9SXM9	A0A1L9TNX9	A0A1L9SXM9	A0A1L9TNX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.716
A0A1L9SXM9	A0A1L9TPF0	A0A1L9SXM9	A0A1L9TPF0	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A1L9SXM9	A0A1L9TPI0	A0A1L9SXM9	A0A1L9TPI0	Uncharacterized protein.	RRM domain-containing protein.	0.919
A0A1L9SXM9	A0A1L9TQG6	A0A1L9SXM9	A0A1L9TQG6	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 22.	0.999
A0A1L9SXM9	A0A1L9TRY9	A0A1L9SXM9	A0A1L9TRY9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999