(12 nodes) Amino acid permease network (Aspergillus sydowii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9T351	Uncharacterized protein. (514 aa)
	A0A1L9TZJ9	Uncharacterized protein. (445 aa)
	A0A1L9TU19	Uncharacterized protein. (544 aa)
	A0A1L9TNJ5	Uncharacterized protein. (534 aa)
	A0A1L9TLW6	Uncharacterized protein. (519 aa)
	A0A1L9THL5	Uncharacterized protein. (510 aa)
	A0A1L9TGP6	Uncharacterized protein. (569 aa)
	A0A1L9TFZ1	Uncharacterized protein. (508 aa)
	A0A1L9T759	Uncharacterized protein. (420 aa)
	A0A1L9T4B0	Uncharacterized protein. (489 aa)
	A0A1L9T498	Aa_trans domain-containing protein. (470 aa)
	A0A1L9T0U0	AA_permease domain-containing protein. (454 aa)

Your Current Organism:

Aspergillus sydowii

NCBI taxonomy Id: 1036612
Other names: A. sydowii CBS 593.65, Aspergillus sydowii CBS 593.65

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9T0U0	A0A1L9THL5	AA_permease domain-containing protein.	Uncharacterized protein.	0.402
A0A1L9T0U0	A0A1L9TU19	AA_permease domain-containing protein.	Uncharacterized protein.	0.402
A0A1L9T4B0	A0A1L9THL5	Uncharacterized protein.	Uncharacterized protein.	0.498
A0A1L9T4B0	A0A1L9TU19	Uncharacterized protein.	Uncharacterized protein.	0.498
A0A1L9THL5	A0A1L9T0U0	Uncharacterized protein.	AA_permease domain-containing protein.	0.402
A0A1L9THL5	A0A1L9T4B0	Uncharacterized protein.	Uncharacterized protein.	0.498
A0A1L9TU19	A0A1L9T0U0	Uncharacterized protein.	AA_permease domain-containing protein.	0.402
A0A1L9TU19	A0A1L9T4B0	Uncharacterized protein.	Uncharacterized protein.	0.498