STRINGSTRING
sigD sigD alr3829 alr3829 all3853 all3853 rpoA rpoA sigF sigF alr4529 alr4529 asr4648 asr4648 sigA sigA nusG nusG alr0277 alr0277 alr3280 alr3280 alr3426 alr3426 all3581 all3581 alr3583 alr3583 sigE sigE rpoC2 rpoC2 asr0798 asr0798 rpoB rpoB rpoC1 rpoC1 sigC sigC nusB nusB alr1999 alr1999 all2193 all2193 all2705 all2705 all3054 all3054
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sigDGroup 2 sigma 70-type sigma factor D; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (332 aa)
alr3829Transcription termination factor; Participates in both transcription termination and antitermination. (425 aa)
all3853Group 3 sigma 37-type sigma factor; ORF_ID:all3853; Belongs to the sigma-70 factor family. (258 aa)
rpoARNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (315 aa)
sigFGroup 2 sigma 70-type sigma factor F; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (390 aa)
alr4529ORF_ID:alr4529; hypothetical protein. (214 aa)
asr4648DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (78 aa)
sigATranscription initiation factor sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (390 aa)
nusGTranscription antitermination protein; Participates in transcription elongation, termination and antitermination. (210 aa)
alr0277RNA polymerase sigma-37 factor; ORF_ID:alr0277; Belongs to the sigma-70 factor family. (261 aa)
alr3280RNA polymerase sigma-E factor; ORF_ID:alr3280; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa)
alr3426ORF_ID:alr3426; hypothetical protein. (123 aa)
all3581ORF_ID:all3581; unknown protein. (409 aa)
alr3583ORF_ID:alr3583; unknown protein. (213 aa)
sigEGroup 2 sigma 70-type sigma factor E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (327 aa)
rpoC2RNA polymerase beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. (1350 aa)
asr0798ORF_ID:asr0798; hypothetical protein; Belongs to the BolA/IbaG family. (80 aa)
rpoBRNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1131 aa)
rpoC1RNA polymerase gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (625 aa)
sigCRNA polymerase sigma-subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (416 aa)
nusBTranscription termination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (211 aa)
alr1999ORF_ID:alr1999; hypothetical protein. (216 aa)
all2193ORF_ID:all2193; probable sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa)
all2705ORF_ID:all2705; hypothetical protein. (416 aa)
all3054ORF_ID:all3054; hypothetical protein. (1038 aa)
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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