46 items (Nostoc sp. PCC7120) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	asr3694	ORF_ID:asr3694; unknown protein. (55 aa)
	all3678	Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (589 aa)
	asl3656	ORF_ID:asl3656; hypothetical protein. (98 aa)
	alr3655	ORF_ID:alr3655; photomixotrophic growth related protein, PmgA homolog. (149 aa)
	alr3583	ORF_ID:alr3583; unknown protein. (213 aa)
	all3581	ORF_ID:all3581; unknown protein. (409 aa)
	all3578	DNA polymerase III alpha subunit; ORF_ID:all3578. (877 aa)
	all3447	ORF_ID:all3447; unknown protein. (195 aa)
	alr3426	ORF_ID:alr3426; hypothetical protein. (123 aa)
	alr3423	ORF_ID:alr3423; similar to anti-sigma-B factor. (147 aa)
	alr3394	ORF_ID:alr3394; hypothetical protein. (171 aa)
	all2796	ORF_ID:all2796; hypothetical protein. (470 aa)
	radC	DNA repair protein; ORF_ID:alr2351; radC gene product; Belongs to the UPF0758 family. (243 aa)
	rsbW	sigma-B activity negative regulator; ORF_ID:all2284; rsbW gene product. (165 aa)
	all2193	ORF_ID:all2193; probable sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa)
	all2192	ORF_ID:all2192; hypothetical protein. (260 aa)
	all2011	Permease protein of ABC transporter; ORF_ID:all2011. (313 aa)
	sigE	Group 2 sigma 70-type sigma factor E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (327 aa)
	sigD	Group 2 sigma 70-type sigma factor D; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (332 aa)
	all3853	Group 3 sigma 37-type sigma factor; ORF_ID:all3853; Belongs to the sigma-70 factor family. (258 aa)
	all4117	ORF_ID:all4117; unknown protein. (411 aa)
	asr4648	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (78 aa)
	rpoA	RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (315 aa)
	alr3280	RNA polymerase sigma-E factor; ORF_ID:alr3280; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa)
	all4729	ORF_ID:all4729; hypothetical protein. (236 aa)
	alr4839	ORF_ID:alr4839; hypothetical protein. (157 aa)
	all5003	Permease protein of peptide ABC transporter; ORF_ID:all5003. (272 aa)
	sigA	Transcription initiation factor sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (390 aa)
	rpoC2	RNA polymerase beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. (1350 aa)
	rpoC1	RNA polymerase gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (625 aa)
	rpoB	RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1131 aa)
	sigF	Group 2 sigma 70-type sigma factor F; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (390 aa)
	alr4529	ORF_ID:alr4529; hypothetical protein. (214 aa)
	alr1556	Permease protein of ABC transporter; ORF_ID:alr1556. (372 aa)
	rpl27	50S ribosomal protein L27; ORF_ID:asl0146; Belongs to the bacterial ribosomal protein bL27 family. (92 aa)
	all0232	ORF_ID:all0232; hypothetical protein. (209 aa)
	all0270	Diacylglycerol kinase; ORF_ID:all0270. (151 aa)
	alr0277	RNA polymerase sigma-37 factor; ORF_ID:alr0277; Belongs to the sigma-70 factor family. (261 aa)
	alr1054	DNA polymerase III alpha subunit; ORF_ID:alr1054. (450 aa)
	all1323	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (640 aa)
	all1327	ORF_ID:all1327; hypothetical protein. (266 aa)
	alr1999	ORF_ID:alr1999; hypothetical protein. (216 aa)
	all1702	Anti-sigma B factor; ORF_ID:all1702. (142 aa)
	sigC	RNA polymerase sigma-subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (416 aa)
	alr3769	ORF_ID:alr3769; hypothetical protein. (240 aa)
	alr3760	ORF_ID:alr3760; unknown protein. (138 aa)

Your Current Organism:

Nostoc sp. PCC7120

NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
all1323	all3578	gene:10493337	gene:10495619	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA polymerase III alpha subunit; ORF_ID:all3578.	0.678
all1323	all3853	gene:10493337	gene:10495895	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Group 3 sigma 37-type sigma factor; ORF_ID:all3853; Belongs to the sigma-70 factor family.	0.618
all1323	alr1054	gene:10493337	gene:10493068	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA polymerase III alpha subunit; ORF_ID:alr1054.	0.652
all1323	rpl27	gene:10493337	gene:10492151	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	50S ribosomal protein L27; ORF_ID:asl0146; Belongs to the bacterial ribosomal protein bL27 family.	0.814
all1323	rpoA	gene:10493337	gene:10496240	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.606
all1323	rpoB	gene:10493337	gene:10493610	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.860
all1323	rpoC1	gene:10493337	gene:10493611	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.485
all1323	rpoC2	gene:10493337	gene:10493612	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.	0.428
all1323	sigA	gene:10493337	gene:10497322	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Transcription initiation factor sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.902
all1323	sigC	gene:10493337	gene:10493709	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigma-subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.880
all1323	sigD	gene:10493337	gene:10495852	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Group 2 sigma 70-type sigma factor D; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.878
all1323	sigE	gene:10493337	gene:10495842	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Group 2 sigma 70-type sigma factor E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.887
all1323	sigF	gene:10493337	gene:10496298	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Group 2 sigma 70-type sigma factor F; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.866
all1702	all3581	gene:10493720	gene:10495622	Anti-sigma B factor; ORF_ID:all1702.	ORF_ID:all3581; unknown protein.	0.496
all1702	all3853	gene:10493720	gene:10495895	Anti-sigma B factor; ORF_ID:all1702.	Group 3 sigma 37-type sigma factor; ORF_ID:all3853; Belongs to the sigma-70 factor family.	0.496
all1702	alr0277	gene:10493720	gene:10492285	Anti-sigma B factor; ORF_ID:all1702.	RNA polymerase sigma-37 factor; ORF_ID:alr0277; Belongs to the sigma-70 factor family.	0.496
all1702	alr3583	gene:10493720	gene:10495624	Anti-sigma B factor; ORF_ID:all1702.	ORF_ID:alr3583; unknown protein.	0.577
all1702	alr3655	gene:10493720	gene:10495697	Anti-sigma B factor; ORF_ID:all1702.	ORF_ID:alr3655; photomixotrophic growth related protein, PmgA homolog.	0.437
all2192	all2193	gene:10494221	gene:10494222	ORF_ID:all2192; hypothetical protein.	ORF_ID:all2193; probable sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.969
all2192	alr1999	gene:10494221	gene:10494023	ORF_ID:all2192; hypothetical protein.	ORF_ID:alr1999; hypothetical protein.	0.481

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