STRINGSTRING
all3558 all3558 alr1927 alr1927 all2031 all2031 all2930 all2930 rfbC rfbC hetC hetC all2724 all2724 all2676 all2676 alr2518 alr2518 alr2325 alr2325 all3747 all3747 alr4010 alr4010 all4541 all4541 all5011 all5011 all4538 all4538 all4500 all4500 rfbC-2 rfbC-2 all0620 all0620 alr0618 alr0618 alr0295 alr0295 all1035 all1035 alr1063 alr1063 all1172 all1172 alr1539 alr1539 asr1714 asr1714 all4236 all4236 alr4239 alr4239 alr4454 alr4454 ntcA ntcA all4342 all4342 alr0898 alr0898
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
all3558Nitrogen assimilation regulatory protein; ORF_ID:all3558. (841 aa)
alr1927ABC transporter ATP-binding protein; ORF_ID:alr1927. (1011 aa)
all2031ORF_ID:all2031; unknown protein. (364 aa)
all2930ORF_ID:all2930; hypothetical protein. (122 aa)
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (189 aa)
hetCHeterocyst differentiation protein; ORF_ID:alr2817; hetC gene product. (1044 aa)
all2724Acireductone dioxygenase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. (182 aa)
all2676Toxin secretion ABC transporter ATP-binding protein; ORF_ID:all2676. (989 aa)
alr2518ORF_ID:alr2518; hypothetical protein. (203 aa)
alr2325Transcriptional regulator; ORF_ID:alr2325. (227 aa)
all3747ORF_ID:all3747; hypothetical protein. (151 aa)
alr4010ORF_ID:alr4010; hypothetical protein. (196 aa)
all4541ORF_ID:all4541; hypothetical protein. (193 aa)
all5011ORF_ID:all5011; unknown protein. (320 aa)
all4538Mannose-6-phosphate isomerase; ORF_ID:all4538. (135 aa)
all4500Transcriptional regulator; ORF_ID:all4500. (208 aa)
rfbC-2dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
all0620ORF_ID:all0620; hypothetical protein. (124 aa)
alr0618ORF_ID:alr0618; hypothetical protein. (242 aa)
alr0295Transcriptional regulator; ORF_ID:alr0295. (232 aa)
all1035Transcriptional regulator; ORF_ID:all1035. (146 aa)
alr1063ORF_ID:alr1063; hypothetical protein; Belongs to the pirin family. (311 aa)
all1172ORF_ID:all1172; hypothetical protein; Belongs to the pirin family. (238 aa)
alr1539ORF_ID:alr1539; hypothetical protein. (155 aa)
asr1714ORF_ID:asr1714; hypothetical protein. (90 aa)
all4236ORF_ID:all4236; unknown protein. (113 aa)
alr4239Toxin secretion ABC transporter ATP-binding protein; ORF_ID:alr4239. (1003 aa)
alr4454Transcriptional regulator; ORF_ID:alr4454. (226 aa)
ntcANitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. (223 aa)
all4342Mannose-6-phosphate isomerase; ORF_ID:all4342. (140 aa)
alr0898ORF_ID:alr0898; hypothetical protein. (113 aa)
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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